- CALCULATEDPROPERTIES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CalculatedPropertiesTags
-
- CalculatedPropertiesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the CalculatedProperties XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- CARRIER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CarriersTags
-
- CARRIERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CarriersTags
-
- CarriersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Carriers XMl Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- CAS - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- CASNUMBER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- CATEGORIES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CategoriesTags
-
- CategoriesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- CATEGORY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CategoriesTags
-
- CATEGORY - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- CD - Variable in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- CHAIN - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SequenceTypeTags
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
- characters(char[], int, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
- characters(char[], int, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.EntrySet
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
This is the characters method
- characters(char[], int, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.MIF25DefaultHandler
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
This is the characters method
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
- characters(char[], int, int) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefDefaultHandler
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefXML
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Entry
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- characters(String, String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
- characters(char[], int, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.UniprotDefaultHandler
-
- charactersGOHeader(String, String, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOHeader
-
- charactersGOTerm(String, String, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOTerm
-
- Chromosome - Class in org.jbiowh.core.datasets.gene.utils
-
This Class handled Chromosome PTT
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-08 14:37:19 +0100
(Thu, 08 Nov 2012) $ $LastChangedRevision: 515 $
- Chromosome() - Constructor for class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Creates the Chromosome
- Chromosome() - Method in class org.jbiowh.tools.gene.FindGenefromProteinGi
-
Read a file with the proteinGi id from Gene and print the PTT table for
this chromosome with a number of pb up and down
- CITATIONSFILE - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- CITTAX - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- CITTAXFILE - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- CLASS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TaxonomyTags
-
- CLASS - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- CLASS - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- CLASS - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- clear() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Clear the chromosome gene list
- clear() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
- clear() - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Remove all nodes except the root node.
- CLEARANCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- CLOSE_ICON - Variable in class org.jbiowh.gui.component.icons.IconFetch
-
The close icon to be used on the tabs
- CloseActionListener - Class in org.jbiowh.gui.actions.jbiowh
-
This class is the close action for the main window
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- CloseActionListener(JBioWH) - Constructor for class org.jbiowh.gui.actions.jbiowh.CloseActionListener
-
Creates the close action for the main window
- closeAll() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Close all active connections
- closeAllPrintWriter() - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Close all created files
- closeConnection() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Close the connection with the DBMS database
- closeConnection() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Close the connection with the DBMS database
- closeConnection() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Close the connection with the DBMS
- ClosePanel - Class in org.jbiowh.gui.component.panel.tabbedpanel
-
This JPanel is the Close panel for JTabbedPanel
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 273 $
- ClosePanel(JTabbedPane, String, UUID, ActionListener) - Constructor for class org.jbiowh.gui.component.panel.tabbedpanel.ClosePanel
-
Creates new form ClosePanel
- closeSchema(boolean) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Close the main schema
- closeSchema(String, boolean) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Close the schema using its URL
- closeSchema(WHDBMSFactory, boolean) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Close the schema using its WHDBMSFactory
- CN - Variable in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- CODE - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- COFACTOR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- COG - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- collapsePathFromLevel(int) - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Collapse the tree from the level
- collectionFieldContains(String, T) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Perform the search over the collection selected field
- COMMENT - Variable in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- COMMENT - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- COMMENT - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- COMMENT - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- Comment - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Comment tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Comment() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
This constructor initialize the WH file manager and the WH DataSet
manager
- CommentTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Comment tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- CommentTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- compare(GenePTT, GenePTT) - Method in class org.jbiowh.core.datasets.gene.utils.GenePTTComparator
-
- Component - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Component XML parser from JAXB for KGML file format
- Component() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Component
-
- component - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
- COMPOSITION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- COMPOUND - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- Confidence - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Confidence Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Confidence() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ConfidenceList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ConfidenceList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ConfidenceList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ConfidenceListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ConfidenceList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ConfidenceListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceListTags
-
- ConfidenceTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Confidence Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ConfidenceTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- Conflict - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Conflict tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Conflict() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ConflictTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Conflict tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ConflictTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- ConstrainPanel - Class in org.jbiowh.gui.component.panel
-
This JPanel is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-08 15:29:16 +0200
(Mon, 08 Oct 2012) $ $LastChangedRevision: 396 $
- ConstrainPanel(JComponent) - Constructor for class org.jbiowh.gui.component.panel.ConstrainPanel
-
Creates new form ConstrainPanel
- ConstrainPanel(JPLConstrains, JComponent) - Constructor for class org.jbiowh.gui.component.panel.ConstrainPanel
-
Creates new form ConstrainPanel
- ConstrainsTableModel - Class in org.jbiowh.gui.component.table.model
-
This class is the Table Model based on Constrains
$Author$ $LastChangedDate$ $LastChangedRevision$
- ConstrainsTableModel(JPLConstrains, String[], Class[], boolean[]) - Constructor for class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- containsColumnName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return true if the handler contains a column with name: name
- containsIndexName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return true if the handler contains an index with name: name
- containsVertex(Object) - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
Return true if the graph contains the object as vertex
- coords - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
- COST - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- countElements() - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- COUNTRY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
- countTablesRow(List<String>) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- countTablesRow(List<String>) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
This method return in a String format the table's number of rows
- create(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- create(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- create(PfamArchitecture) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- create(PfamARegFullInsignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- create(PfamARegFullSignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- create(PfamBbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- create(PfamClans) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- create(PfamCompleteProteomes) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- create(PfamLiteratureReferences) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- create(PfamProteomeRegions) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- create(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- create(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GeneInfoJpaController
-
- create(GenePTT) - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GenePTTJpaController
-
- create(DataSet) - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
Creates a DataSet entity
- create(WidTable) - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Creates a WidTable entity
- create(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- create(OntologySynonym) - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- create(KEGGCompound) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- create(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- create(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- create(KEGGGlycan) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- create(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- create(KEGGReaction) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- create(KEGGRPair) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- create(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- create(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- create(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- create(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- create(MIFEntrySet) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- create(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- create(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- create(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- create(UniRefEntry) - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- create(UniRefMember) - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- create(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- create(ProteinKeyword) - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- create(Taxonomy) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- createAllExternalJpaRelationship(EntityManagerFactory) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Create a graph with all entities classes relationship
- createAlt() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
Create an instance of
Alt
- createCanEdit() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Create the Edit array
- createChromosomeFromGeneId(Long) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome List (chromosome) from one of its genes
- createChromosomeFromGeneInfo(Long) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome from one of its genes
- createChromosomeFromGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome from one of its genes
- createChromosomeFromGenePTT(GenePTT) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome List (chromosome) from one of its genes
- createChromosomeFromParm(HashMap) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome from one its PTT file name
- createChromosomeFromProteinGi(Long) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome from one of its proteinGi
- createChromosomeFromPTTFile(String) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome List (chromosome) from one its PTT file name
- createChromosomeFromTaxonomy(Long) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Create a Chromosome from one of its genes
- createClass() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Create the Class array to build the Table
- createComponent() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- createController() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
- createController() - Method in class org.jbiowh.core.utility.controller.AbstractController
-
Creates the JPA controller
- CREATED - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- createDataSet(EntityManagerFactory, EntityManager, DataSet) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the DataSet the be persisted
- createDrugBank(EntityManagerFactory, EntityManager, Set<DrugBank>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the DrugBank list the be persisted
- createEdit(int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Creates the edit list for a number of rows
- createEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
Create an instance of
Entry
- createExternalJpaRelationshipGraph(Class, EntityManagerFactory) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Create a graph for the entities classes starting on the target entity
class
- createGeneInfo(EntityManagerFactory, EntityManager, Set<GeneInfo>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the GeneInfo list the be persisted
- createGraphics() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- createJMenu(String) - Method in class org.jbiowh.gui.component.popup.BasicPopup
-
Create a JMenu on this popup
- createJMenuItem(String, int, int) - Method in class org.jbiowh.gui.component.popup.BasicPopup
-
Create a JMenuItem on this popup
- createJTableHeader() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Create the Table Header
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.disease.OMIMListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.drug.DrugBankListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.gene.GeneInfoListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.gene.GenePTTListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.ontology.OntologyListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.protein.ProteinListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.protfam.UniRefEntryListView
-
- createJTableHeader() - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyListView
-
- createKEGGCompound(EntityManagerFactory, EntityManager, Set<KEGGCompound>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the KEGGCompound list the be persisted
- createKEGGEnzyme(EntityManagerFactory, EntityManager, Set<KEGGEnzyme>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the KEGGEnzyme list the be persisted
- createKEGGGene(EntityManagerFactory, EntityManager, Set<KEGGGene>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the KEGGGene list the be persisted
- createKEGGGlycan(EntityManagerFactory, EntityManager, Set<KEGGGlycan>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.AbstractKEGGJpaController
-
Return the KEGGGlycan list the be persisted
- createKEGGPathway(EntityManagerFactory, EntityManager, Set<KEGGPathway>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the KEGGPathway list the be persisted
- createKEGGReaction(EntityManagerFactory, EntityManager, Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.AbstractKEGGJpaController
-
Return the KEGGReaction list the be persisted
- createMIFEntryExperiment(EntityManagerFactory, EntityManager, Set<MIFEntryExperiment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntryExperiment list the be persisted
- createMIFEntryExperiment(EntityManagerFactory, EntityManager, MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntryExperiment object the be persisted
- createMIFEntryInteraction(EntityManagerFactory, EntityManager, MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntryInteraction list the be persisted
- createMIFEntryInteraction(EntityManagerFactory, EntityManager, Set<MIFEntryInteraction>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the MIFEntryInteraction list the be persisted
- createMIFEntryInteractor(EntityManagerFactory, EntityManager, Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntryInteractor list the be persisted
- createMIFEntryInteractor(EntityManagerFactory, EntityManager, MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntryInteractor object the be persisted
- createMIFEntrySetEntry(EntityManagerFactory, EntityManager, MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntrySetEntry list the be persisted
- createMIFEntrySetEntry(EntityManagerFactory, EntityManager, Set<MIFEntrySetEntry>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntrySetEntry list the be persisted
- createMIFEntrySource(EntityManagerFactory, EntityManager, Set<MIFEntrySource>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFEntrySource list the be persisted
- createMIFInteractionParticipant(EntityManagerFactory, EntityManager, Set<MIFInteractionParticipant>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFInteractionParticipant list the be persisted
- createMIFInteractionParticipant(EntityManagerFactory, EntityManager, MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFInteractionParticipant object the be persisted
- createMIFOtherAlias(EntityManagerFactory, EntityManager, Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherAlias list the be persisted
- createMIFOtherAttribute(EntityManagerFactory, EntityManager, Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherAttribute list the be persisted
- createMIFOtherBibRef(EntityManagerFactory, EntityManager, Set<MIFOtherBibRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherBibRef list the be persisted
- createMIFOtherBioSourceType(EntityManagerFactory, EntityManager, Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherBioSourceType list the be persisted
- createMIFOtherConfidence(EntityManagerFactory, EntityManager, Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherConfidence list the be persisted
- createMIFOtherXRef(EntityManagerFactory, EntityManager, Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherXRef list the be persisted
- createMIFOtherXRefGO(EntityManagerFactory, EntityManager, Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherXRefGO list the be persisted
- createMIFOtherXRefPubMed(EntityManagerFactory, EntityManager, Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherXRefPubMed list the be persisted
- createMIFOtherXRefRefSeq(EntityManagerFactory, EntityManager, Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherXRefRefSeq list the be persisted
- createMIFOtherXRefUniprot(EntityManagerFactory, EntityManager, Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.AbstractMIFJpaController
-
Return the MIFOtherXRefUniprot list the be persisted
- createNamedQuery(String) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
This method create and perform the NamedQuery over the selected entity
- createNamedQuery(String, int[]) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
This method create and perform the NamedQuery over the selected entity
- createNamedQuery(String, HashMap<String, Object>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
This method create and perform the NamedQuery over the selected entity
with defined parameters
- createNamedQuery(String, HashMap<String, Object>, int[]) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
This method create and perform the NamedQuery over the selected entity
with defined parameters
- createOntology(EntityManagerFactory, EntityManager, Set<Ontology>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the Ontology list the be persisted
- createPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- createPfamA(EntityManagerFactory, EntityManager, PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamAbioWH the be persisted
- createPfamA(EntityManagerFactory, EntityManager, Set<PfamAbioWH>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the PfamAbioWH list the be persisted
- createPfamArchitecture(EntityManagerFactory, EntityManager, Set<PfamArchitecture>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamArchitectures list the be persisted
- createPfamARegFullInsignificant(EntityManagerFactory, EntityManager, Set<PfamARegFullInsignificant>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamARegFullInsignificant list the be persisted
- createPfamARegFullSignificant(EntityManagerFactory, EntityManager, Set<PfamARegFullSignificant>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamARegFullSignificant list the be persisted
- createPfamClans(EntityManagerFactory, EntityManager, Set<PfamClans>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamClans list the be persisted
- createPfamCompleteProteomes(EntityManagerFactory, EntityManager, PfamCompleteProteomes) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamCompleteProteomes list the be persisted
- createPfamLiteratureReferences(EntityManagerFactory, EntityManager, Set<PfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamLiteratureReferences list the be persisted
- createPfamProteomeRegions(EntityManagerFactory, EntityManager, Map<PfamProteomeRegionsPK, PfamProteomeRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.AbstractPFamJpaController
-
Return the PfamProteomeRegions list the be persisted
- createPrimaryKey() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Creates the Primary Key from the columns
- createProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- createProtein(EntityManagerFactory, EntityManager, Set<Protein>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the Protein list the be persisted
- createReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- createRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- CreateSchemaDialog - Class in org.jbiowh.gui.sqltables
-
This JDialog is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-03 22:11:05 +0200
(Wed, 03 Oct 2012) $ $LastChangedRevision: 396 $
- CreateSchemaDialog(Frame, boolean, WHDBMSFactory) - Constructor for class org.jbiowh.gui.sqltables.CreateSchemaDialog
-
Creates new form CreateSchemaDialog
- createSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- createSubtype() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
- CreateTable - Class in org.jbiowh.gui.sqltables
-
This JDialog handled the SQL table creation process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTable(Frame, boolean, WHDBMSFactory) - Constructor for class org.jbiowh.gui.sqltables.CreateTable
-
Creates new form CreateTable
- CreateTableColumnListener - Class in org.jbiowh.gui.sqltables.listener
-
This Class is the Table ModeListener fro the Index Column tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTableColumnListener(JComboBox) - Constructor for class org.jbiowh.gui.sqltables.listener.CreateTableColumnListener
-
- CreateTableColumnModel - Class in org.jbiowh.gui.component.table.model
-
This Class is the table model to create a table index column
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTableColumnModel(String[], SQLTable, Class[], boolean[]) - Constructor for class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Create a table model for the SQL create table index column table
- CreateTableIndexlListener - Class in org.jbiowh.gui.sqltables.listener
-
This Class is the Table ModeListener fro the Index tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTableIndexlListener(CreateTableColumnModel) - Constructor for class org.jbiowh.gui.sqltables.listener.CreateTableIndexlListener
-
- CreateTableIndexModel - Class in org.jbiowh.gui.component.table.model
-
This Class is the table model to create a table index
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTableIndexModel(String[], SQLTable, Class[], boolean[]) - Constructor for class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
Create a table model for the SQL create table index table
- CreateTableListener - Class in org.jbiowh.gui.sqltables.listener
-
This Class is the Table ModeListener fro the Column tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTableListener(JTabbedPane, CreateTableIndexModel) - Constructor for class org.jbiowh.gui.sqltables.listener.CreateTableListener
-
- CreateTableModel - Class in org.jbiowh.gui.component.table.model
-
This Class is the table model to create a table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- CreateTableModel(String[], SQLTable, Class[], boolean[]) - Constructor for class org.jbiowh.gui.component.table.model.CreateTableModel
-
Create a table model for the SQL create table process
- createTaxonomy(EntityManagerFactory, EntityManager, Taxonomy) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the Taxonomy the be persisted
- createUniqueKey() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Creates the Unique Key from the columns
- createUniRefEntry(EntityManagerFactory, EntityManager, Set<UniRefEntry>, Protein) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the UniRefEntry list the be persisted
- createUniRefMember(EntityManagerFactory, EntityManager, Set<UniRefMember>) - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
Return the UniRefMember list the be persisted
- CS - Variable in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- CURRENCY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- currentTime() - Method in class org.jbiowh.core.utility.utils.BioWHTime
-
- currentTime(String) - Method in class org.jbiowh.core.utility.utils.BioWHTime
-
- CVType - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML cvType Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- CVType(String) - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
This constructor initialize the WH file manager and the WH DataSet
manager
- CVTypeList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML CVTypeList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- CVTypeList(String, String) - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- DataSet - Class in org.jbiowh.core.datasets.mainloader.entities
-
This Class is the DataSet entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- DataSet() - Constructor for class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Creates a dataSet entity
- DataSet(Long) - Constructor for class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Creates a dataSet entity with an id
- DataSet(Long, String, Date, String) - Constructor for class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Creates a dataSet entity with the parameters
- DataSetFactory - Class in org.jbiowh.core.datasets.mainloader
-
This Class extends DataSet for new informations
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- DataSetJpaController - Class in org.jbiowh.core.datasets.mainloader.controller
-
This Class is the DataSet entity JPA controller class
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 322 $
- DataSetJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
Creates a DataSet JPA Controller and initialize the EntityManagerFactory
- DataSetLoader - Class in org.jbiowh.core.datasets.mainloader
-
This Class to start parsing from the command line the data sources
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-03 22:11:05 +0200
(Wed, 03 Oct 2012) $ $LastChangedRevision: 396 $
- DataSetLoader() - Constructor for class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
- dataSetLoader() - Method in class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
- dataSetObject - Variable in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
The dataset entity type
- DataSetReport - Class in org.jbiowh.tools.dataset
-
This class is generate a report of one DataSet
$Author$ $LastChangedDate$ $LastChangedRevision$
- DataSetReport() - Constructor for class org.jbiowh.tools.dataset.DataSetReport
-
- DataSetsTables - Class in org.jbiowh.core.datasets.mainloader
-
This Class is return all Tables included into the relational schema
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- DataTypeComboBoxEditor - Class in org.jbiowh.gui.sqltables.listener
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- DataTypeComboBoxEditor(Dimension) - Constructor for class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- DBLINKDB - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- DBLINKDB - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- DBLINKDB - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- DBLINKDB - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- DBLINKID - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- DBLINKID - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- DBLINKID - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- DBLINKID - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- DBLINKS - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- DBREFERENCE - Variable in class org.jbiowh.core.datasets.protclust.parser.xml.tags.MemberTypeTags
-
- DBReference - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the dbReference tgs on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- DBReference() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
This constructor initialize the WH file manager and the WH DataSet
manager
- DBReferenceTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the Uniprot XML dbReference Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DBReferenceTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- DEBUG - Variable in class org.jbiowh.core.logger.VerbLogger
-
This is the debug message information level
- DEFINITION - Variable in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- DEFINITION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- DEFINITION - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- depth - Variable in class org.jbiowh.core.utility.graph.BioWHGraph
-
The recursivity depth limit
- DESCRIPTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugInteractionsTags
-
- DESCRIPTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- DESCRIPTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- DESCRIPTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- DESCRIPTION - Variable in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- destroy(PfamProteomeRegionsPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GeneInfoJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GenePTTJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
Destroy a DataSet entity object from its Id
- destroy(Long) - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Destroy a WidTable entity from its Id
- destroy(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- destroy(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- DISEASE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- DISEASEENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- DISEASENAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- dispose() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Removes this MenuScroller from the associated menu and restores the
default behavior of the menu.
- DIVISIONFILE - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- DIVISIONTEMP - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- DOSAGE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DosagesTags
-
- DOSAGES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DosagesTags
-
- DosagesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Dosages XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- doubleMouseClicked(MouseEvent) - Method in class org.jbiowh.gui.component.panel.result.ResultPanel
-
- doubleMouseClicked(MouseEvent) - Method in class org.jbiowh.gui.component.panel.sql.SQLTableViewPanel
-
- doubleMouseClicked(MouseEvent) - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Provides the Mouse Click action
- dropTable(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Drop the table on the DBMS
- dropTable(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Drop the table on the DBMS
- Drug - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
This class is the Drug XMl parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Drug() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
This constructor initialize the WH file manager and the WH DataSet
manager
- DRUG - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugInteractionsTags
-
- DRUG - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- DRUG_TARGET - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- DrugBank - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBank entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- DrugBank() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- DrugBank(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- DrugBank(Long, String, String, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- DRUGBANK - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANK_HAS_DRUGBANKCATEGORIES - Static variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANK_HAS_DRUGBANKPATENTS - Static variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANK_ID - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- DrugBankAffectedOrganisms - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankAffectedOrganisms entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankAffectedOrganisms() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- DrugBankAffectedOrganisms(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- DrugBankAffectedOrganisms(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- DRUGBANKAFFECTEDORGANISMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankAHFSCodes - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankAHFSCodes entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankAHFSCodes() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- DrugBankAHFSCodes(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- DrugBankAHFSCodes(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- DRUGBANKAHFSCODES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankATCCodes - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankATCCodes entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankATCCodes() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- DrugBankATCCodes(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- DrugBankATCCodes(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- DRUGBANKATCCODES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankBrands - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankBrands entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankBrands() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- DrugBankBrands(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- DrugBankBrands(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- DRUGBANKBRANDS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankCalculatedProperties - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankCalculatedProperties entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankCalculatedProperties() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- DrugBankCalculatedProperties(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- DrugBankCalculatedProperties(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- DRUGBANKCALCULATEDPROPERTIES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankCarriers - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankCarriers entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankCarriers() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- DrugBankCarriers(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- DrugBankCarriers(Long, long, int) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- DRUGBANKCARRIERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankCarriersActions - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankCarriersActions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankCarriersActions() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- DrugBankCarriersActions(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- DrugBankCarriersActions(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- DRUGBANKCARRIERSACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankCarriersRef - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankCarriersRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankCarriersRef() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- DrugBankCarriersRef(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- DrugBankCarriersRef(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- DRUGBANKCARRIERSREF - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankCategories - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankCategories entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankCategories() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- DrugBankCategories(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- DRUGBANKCATEGORIES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKCATEGORIESTEMP - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankDataSetView - Class in org.jbiowh.gui.datasets.drug
-
This Class handled the DrugBank View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- DrugBankDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.drug.DrugBankDataSetView
-
Creates new form AbstractDataSetView
- DrugBankDefaultHandler - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
This class is the DrugBank XML DefaultHandler
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankDefaultHandler(Drugs) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- DrugBankDosages - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankDosages entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankDosages() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- DrugBankDosages(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- DrugBankDosages(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- DRUGBANKDOSAGES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankDrugInteractions - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This Class is the DrugBank Drug Interactions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankDrugInteractions() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- DrugBankDrugInteractions(DrugBankDrugInteractionsPK) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- DrugBankDrugInteractions(long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- DRUGBANKDRUGINTERACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- drugBankDrugInteractionsPK - Variable in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- DrugBankDrugInteractionsPK - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This Class is the DrugBankDrugInteractions PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankDrugInteractionsPK() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- DrugBankDrugInteractionsPK(long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- DRUGBANKDRUGINTERACTIONSTEMP - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankEnzymes - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankEnzymes entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankEnzymes() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- DrugBankEnzymes(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- DrugBankEnzymes(Long, long, int) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- DRUGBANKENZYMES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankEnzymesActions - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankEnzymesActions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankEnzymesActions() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- DrugBankEnzymesActions(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- DrugBankEnzymesActions(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- DRUGBANKENZYMESACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankEnzymesRef - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankEnzymesRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankEnzymesRef() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- DrugBankEnzymesRef(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- DrugBankEnzymesRef(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- DRUGBANKENZYMESREF - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankExperimentalProperties - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankExperimentalProperties entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankExperimentalProperties() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- DrugBankExperimentalProperties(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- DrugBankExperimentalProperties(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- DRUGBANKEXPERIMENTALPROPERTIES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankExternalIdentifiers - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankExternalIdentifiers entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankExternalIdentifiers() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- DrugBankExternalIdentifiers(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- DrugBankExternalIdentifiers(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- DRUGBANKEXTERNALIDENTIFIERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankExternalLinks - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankExternalLinks entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankExternalLinks() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- DrugBankExternalLinks(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- DrugBankExternalLinks(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- DRUGBANKEXTERNALLINKS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankFoodInteractions - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankFoodInteractions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankFoodInteractions() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- DrugBankFoodInteractions(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- DrugBankFoodInteractions(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- DRUGBANKFOODINTERACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankGeneralRef - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankGeneralRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankGeneralRef() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- DrugBankGeneralRef(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- DrugBankGeneralRef(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- DRUGBANKGENERALREF - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankGroup - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankGroup entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankGroup() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- DrugBankGroup(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- DrugBankGroup(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- DRUGBANKGROUP - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKID - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- DrugBankJpaController - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.controller
-
This class is the DrugBank Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- DrugBankJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- DrugBankLinks - Class in org.jbiowh.core.datasets.drug.drugbank.parser.links
-
This class is create all DrugBank external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- DrugBankLinks() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.links.DrugBankLinks
-
- DrugBankListView - Class in org.jbiowh.gui.datasets.drug
-
This Class show the DrugBank list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankListView(Collection<DrugBank>, JComponent) - Constructor for class org.jbiowh.gui.datasets.drug.DrugBankListView
-
Create the DrugBankListView object
- DrugBankManufacturers - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankManufacturers entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankManufacturers() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- DrugBankManufacturers(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- DrugBankManufacturers(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- DRUGBANKMANUFACTURERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankMixtures - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankMixtures entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankMixtures() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- DrugBankMixtures(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- DrugBankMixtures(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- DRUGBANKMIXTURES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankPackagers - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankPackagers entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankPackagers() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- DrugBankPackagers(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- DrugBankPackagers(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- DRUGBANKPACKAGERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankParser - Class in org.jbiowh.core.datasets.drug.drugbank.parser
-
This class is the DrugBank Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- DrugBankParser() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankParser
-
- DRUGBANKPARTNEREXTERNALIDENTIFIERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKPARTNERPFAM - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKPARTNERREF - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKPARTNERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKPARTNERSYNONYMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankPatents - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankPatents entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankPatents() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- DrugBankPatents(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- DrugBankPatents(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- DRUGBANKPATENTS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGBANKPATENTSTEMP - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankPrices - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankPrices entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankPrices() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- DrugBankPrices(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- DrugBankPrices(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- DRUGBANKPRICES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankProteinLink - Class in org.jbiowh.core.datasets.drug.drugbank.parser.links
-
This Class populates the PROTEIN_HAS_DRUGBANK relationship table
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- DrugBankProteinSequences - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankProteinSequences entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankProteinSequences() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- DrugBankProteinSequences(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- DrugBankProteinSequences(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- DRUGBANKPROTEINSEQUENCES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankSecondAccessionNumbers - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankSecondAccessionNumbers entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankSecondAccessionNumbers() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- DrugBankSecondAccessionNumbers(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- DrugBankSecondAccessionNumbers(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- DRUGBANKSECONDACCESSIONNUMBERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankSplitReference - Class in org.jbiowh.core.datasets.drug.drugbank.parser.utility
-
This class split the DrugBank reference and print it on the relational table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- DrugBankSplitReference() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.utility.DrugBankSplitReference
-
- DrugBankSynonyms - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankSynonyms entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankSynonyms() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- DrugBankSynonyms(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- DrugBankSynonyms(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- DRUGBANKSYNONYMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTables - Class in org.jbiowh.core.datasets.drug.drugbank.parser
-
This class is the DrugBank Tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTargets - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTargets entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTargets() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- DrugBankTargets(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- DrugBankTargets(Long, long, int) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- DRUGBANKTARGETS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTargetsActions - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTargetsActions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTargetsActions() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- DrugBankTargetsActions(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- DrugBankTargetsActions(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- DRUGBANKTARGETSACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTargetsRef - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTargetsRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTargetsRef() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- DrugBankTargetsRef(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- DrugBankTargetsRef(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- DRUGBANKTARGETSREF - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTaxonomy - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTaxonomy entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTaxonomy() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- DrugBankTaxonomy(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- DrugBankTaxonomy(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- DRUGBANKTAXONOMY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTaxonomySubstructures - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTaxonomySubstructures entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTaxonomySubstructures() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- DrugBankTaxonomySubstructures(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- DrugBankTaxonomySubstructures(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- DRUGBANKTAXONOMYSUBSTRUCTURES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTransfer - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.transfer
-
This class handled the DrugBank transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- DrugBankTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.transfer.DrugBankTransfer
-
Create the Drugbank transfer
- DrugBankTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.transfer.DrugBankTransfer
-
Create the Drugbank transfer
- DrugBankTransporters - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTransporters entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTransporters() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- DrugBankTransporters(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- DrugBankTransporters(Long, long, int) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- DRUGBANKTRANSPORTERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTransportersActions - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTransportersActions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTransportersActions() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- DrugBankTransportersActions(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- DrugBankTransportersActions(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- DRUGBANKTRANSPORTERSACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DrugBankTransportersRef - Class in org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
This class is the DrugBankTransportersRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugBankTransportersRef() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- DrugBankTransportersRef(Long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- DrugBankTransportersRef(Long, long) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- DRUGBANKTRANSPORTERSREF - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
- DRUGINTERACTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugInteractionsTags
-
- DRUGINTERACTIONS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugInteractionsTags
-
- DrugInteractionsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the DrugInteractions XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DrugPathwayGraph - Class in org.jbiowh.tools.examples
-
This class creates a Drugs-Protein-Pathway-Protein-Drug graph and retrieve
the shortest path between the first drug and other drug
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-20 10:29:19 +0100
(Wed, 20 Mar 2013) $ $LastChangedRevision: 515 $
- DrugPathwayGraph() - Constructor for class org.jbiowh.tools.examples.DrugPathwayGraph
-
- DrugPathwayGraphFrame - Class in org.jbiowh.tools.examples
-
- DrugPathwayGraphFrame() - Constructor for class org.jbiowh.tools.examples.DrugPathwayGraphFrame
-
Creates new form DrugPathwayGraphFrame
- Drugs - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
This class is is the XML start point for DrugBank
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Drugs() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drugs
-
- DrugTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Drug XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- DRUGTARGET - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- EC - Variable in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- ED - Variable in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- edgeAdded(GraphEdgeChangeEvent<V, E>) - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
- edgeCount() - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
Count the graph edges
- edgeRemoved(GraphEdgeChangeEvent<V, E>) - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
- edgeToString(Object, Object, int) - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
Return a string with the edge object in a format with tab in front
- edit(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- edit(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- edit(PfamArchitecture) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- edit(PfamARegFullInsignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- edit(PfamARegFullSignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- edit(PfamBbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- edit(PfamClans) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- edit(PfamCompleteProteomes) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- edit(PfamLiteratureReferences) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- edit(PfamProteomeRegions) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- edit(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- edit(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GeneInfoJpaController
-
- edit(GenePTT) - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GenePTTJpaController
-
- edit(DataSet) - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
Edit a DataSet entity object
- edit(WidTable) - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Edit the WidTable entity
- edit(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- edit(OntologySynonym) - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- edit(KEGGCompound) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- edit(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- edit(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- edit(KEGGGlycan) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- edit(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- edit(KEGGReaction) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- edit(KEGGRPair) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- edit(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- edit(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- edit(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- edit(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- edit(MIFEntrySet) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- edit(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- edit(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- edit(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- edit(UniRefEntry) - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- edit(UniRefMember) - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- edit(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- edit(ProteinKeyword) - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- edit(Taxonomy) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- EditCellTableModel - Class in org.jbiowh.gui.component.table.model
-
This Class is general editable table model
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- EditCellTableModel(String[], Class[], boolean[]) - Constructor for class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Create a table model for the SQL create table process
- EFFECTOR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- end() - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Close and delete all created files
- endElement(String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
This is the endElement method for the Header on GO
- endElement(String, String, String) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- endElement(String, int, boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
This is the endElement method for the Header on GO
- endElement(String, int, boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
This is the endElement method for the Header on GO
- endElement(String, int, boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
This is the endElement method for the Header on GO
- endElement(String, String, String) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
This is the endElement method
- endElement(String, int, String) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
This is the endElement method
- endElement(String, int, String) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.EntrySet
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
This is the endElement method
- endElement(String, String, String) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.MIF25DefaultHandler
-
- endElement(String, int, long, String) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
This is the endElement method
- endElement(String, int, String) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
This is the endElement method
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
This is the endElement method for the Header on GO
- endElement(String, int, boolean) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
This is the endElement method for the Header on GO
- endElement(String, String, String) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefDefaultHandler
-
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefXML
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
This is the endElement method for the Header on GO
- endElement(String, int, Boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Entry
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Location
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Reference
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
This is the endElement method for the Header on GO
- endElement(String, int) - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
This is the endElement method for the Header on GO
- endElement(String, String, String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.UniprotDefaultHandler
-
- endElementGOHeader(String, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOHeader
-
This is the endElement method for the Header on GO
- endElementGOTerm(String, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOTerm
-
This is the endElement method for the Term on GO
- EntityParserFieldProxy - Class in org.jbiowh.gui.datasets
-
This Class is to extract from each Dataset Entity the selected field
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100
(Tue, 19 Mar 2013) $ $LastChangedRevision: 515 $
- EntityParserViewProxy - Class in org.jbiowh.gui.datasets
-
This Class is to visualize the correct Dataset Entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- EntityParserViewProxy(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.EntityParserViewProxy
-
- EntityRelationshipDialog - Class in org.jbiowh.gui.component.graph
-
This Class show a graph with the JBioWH entities relationship
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- EntityRelationshipDialog(Frame, boolean) - Constructor for class org.jbiowh.gui.component.graph.EntityRelationshipDialog
-
Creates new form EntityRelationshipDialog
- Entry - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Entry XML parser from JAXB for KGML file format
- Entry() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
- entry - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
- ENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- ENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- ENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- ENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- ENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- ENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- Entry - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class is the Entry parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Entry() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
This constructor initialize the WH file manager and the WH DataSet
manager
- Entry - Class in org.jbiowh.core.datasets.protclust.parser.xml
-
This Class is handled the XML Entry tag on Uniref
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Entry() - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ENTRY - Variable in class org.jbiowh.core.datasets.protclust.parser.xml.tags.EntryTags
-
- Entry - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Entry tag on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Entry() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Entry
-
This constructor initialize the WH file manager and the WH DataSet
manager
- entry1 - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
- entry2 - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
- EntrySet - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML EntrySet tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- EntrySet() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.EntrySet
-
This constructor initialize the WH file manager and the WH DataSet
manager
- EntrySetTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML EntreSet tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- EntrySetTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- EntryTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class is the Entry XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- EntryTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntryTags
-
- EntryTags - Class in org.jbiowh.core.datasets.protclust.parser.xml.tags
-
This Class storage the Uniprot XML Header Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- EntryTags() - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.tags.EntryTags
-
- EntryTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the Uniprot XML Header Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- EntryTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- ENZYME - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.EnzymesTags
-
- ENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- ENZYMES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.EnzymesTags
-
- EnzymesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Enzymes XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- equals(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- equals(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- equals(Object) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
- equals(Object) - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- equals(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- equals(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- equals(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- equals(Object) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- equals(Object) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
- equals(Object) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
- equals(Object) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
- equals(Object) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
- equals(Object) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Compares this WHDBMSFactory to the specified object.
- EQUATION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- ERROR - Variable in class org.jbiowh.core.logger.VerbLogger
-
This is the error message information level
- EvidencedStringType - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the EvidencedStringType on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- EvidencedStringType() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
This constructor initialize the WH file manager and the WH DataSet
manager
- EvidencedStringTypeTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Tags for EvidencedStringType
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- EvidencedStringTypeTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- execute(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- execute(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
This method execute the SQL sentence.
- executeMultipleSQLSelect(List<String>) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- executeMultipleSQLSelect(List<String>, int, int) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- executeMultipleSQLSelect(List<String>) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Execute multiples SQL select sentences
- executeMultipleSQLSelect(List<String>, int, int) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Execute multiples SQL select sentences with the desired limits
- executeSingleSQLSelect(String, int, int) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- executeSingleSQLSelect(String, int, int) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Execute the SQL select sentence with the desired limits
- executeUpdate(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Executes the given SQL statement, which may be an INSERT, UPDATE, or
DELETE statement or an SQL statement that returns nothing, such as an SQL
DDL statement.
- executeUpdate(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Executes the given SQL statement, which may be an INSERT, UPDATE, or
DELETE statement or an SQL statement that returns nothing, such as an SQL
DDL statement.
- ExperimentalInteractor - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ExperimentalInteractor Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentalInteractor() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ExperimentalInteractorList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ExperimentalInteractorList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentalInteractorList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ExperimentalInteractorListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ExperimentalInteractorList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentalInteractorListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorListTags
-
- ExperimentalInteractorTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ExperimentalInteractor Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentalInteractorTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorTags
-
- EXPERIMENTALPROPERTIES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExperimentalPropertiesTags
-
- ExperimentalPropertiesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is ExperimentalProperties XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ExperimentDescription - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentDescription() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ExperimentDescriptionTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class is the ExperimentDescription XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentDescriptionTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- ExperimentList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ExperimentList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ExperimentListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ExperimentList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentListTags
-
- ExperimentRefList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ExperimentRefList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentRefList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ExperimentRefListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ExperimentRefList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ExperimentRefListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentRefListTags
-
- EXPIRES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
- ExploreDirectory - Class in org.jbiowh.core.utility.utils
-
This class is to explore a complete directory
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ExtendedListTableModel - Class in org.jbiowh.gui.component.table.model
-
This Class is the Table Model based on List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- ExtendedListTableModel(String[], List<List<Object>>, Class[], boolean[]) - Constructor for class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Create the ExtendedListTable model for complex tables
- ExtendedModelData - Class in org.jbiowh.gui.component.table.model.data
-
This Class is the ListTableModel2 data
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- ExtendedModelData() - Constructor for class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Create the extended data object
- EXTERNALIDENTIFIER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalIdentifiersTags
-
- EXTERNALIDENTIFIER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.IdentifiersTypeTags
-
- EXTERNALIDENTIFIERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalIdentifiersTags
-
- EXTERNALIDENTIFIERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.IdentifiersTypeTags
-
- ExternalIdentifiersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the ExternalIdentifiers XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- EXTERNALLINK - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalLinksTags
-
- EXTERNALLINKS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalLinksTags
-
- ExternalLinksTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the ExternalLinks XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- extractFilesPathFromDir(File) - Method in class org.jbiowh.core.utility.utils.ExploreDirectory
-
This return a linked list of file into the directory
- extractFilesPathFromDir(File, String[]) - Method in class org.jbiowh.core.utility.utils.ExploreDirectory
-
This return a linked list of file into the directory
- extractPatternFromField(String, String, String, String, String, String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Format the Entry's field splitting the value by a ArrayList object of
extracted pattern
- GENCODEFILE - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- GENCODETEMP - Variable in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
- Gene - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the Gene on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
This constructor initialize the WH file manager and the WH DataSet
manager
- Gene2Accession - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2Accession entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-03 22:11:05 +0200
(Wed, 03 Oct 2012) $ $LastChangedRevision: 322 $
- Gene2Accession() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- Gene2Accession(Gene2AccessionPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- Gene2Accession(long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- GENE2ACCESSION - Static variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2ACCESSION_HAS_PROTEIN - Static variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2ACCESSIONFILE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2AccessionParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2Accession parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2AccessionParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2AccessionParser
-
- gene2AccessionPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- Gene2AccessionPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2Accession PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2AccessionPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- Gene2AccessionPK(long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- GENE2ACCESSIONTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2Ensembl - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2Ensembl entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2Ensembl() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- Gene2Ensembl(Long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- Gene2Ensembl(Long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- GENE2ENSEMBL - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2ENSEMBLFILE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2EnsemblParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2Ensembl Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2EnsemblParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2EnsemblParser
-
- GENE2ENSEMBLTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2GO - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2GOFILE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2GOParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2GO Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2GOParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2GOParser
-
- GENE2GOTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2MIMParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2MIM Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2MIMParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2MIMParser
-
- Gene2PMID - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is Gene2PMID entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2PMID() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- Gene2PMID(Gene2PMIDPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- Gene2PMID(long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- GENE2PMID - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2PMIDFILE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2PMIDParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2PMID Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2PMIDParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2PMIDParser
-
- gene2PMIDPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- Gene2PMIDPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2PMIDPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2PMIDPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- Gene2PMIDPK(long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- GENE2PUBMEDTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2STS - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is Gene2STS entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2STS() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- Gene2STS(Gene2STSPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- Gene2STS(long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- GENE2STS - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2STSFILE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2STSParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2STS Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2STSParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2STSParser
-
- gene2STSPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- Gene2STSPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2STSPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2STSPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- Gene2STSPK(long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- GENE2STSTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2UniGene - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2UniGene entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2UniGene() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- Gene2UniGene(Gene2UniGenePK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- Gene2UniGene(long, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- GENE2UNIGENE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE2UNIGENEFILE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- Gene2UniGeneParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the Gene2UniGene Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Gene2UniGeneParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.Gene2UniGeneParser
-
- gene2UniGenePK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- Gene2UniGenePK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the Gene2UniGenePK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Gene2UniGenePK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- Gene2UniGenePK(long, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- GENE2UNIGENETEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE_GROUP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE_HISTORY - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE_INFO - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENE_ONTOLOGY - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- GENE_REFSEQ_UNIPROTKB_COLLAB - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GeneDataSetView - Class in org.jbiowh.gui.datasets.gene
-
This Class handled the Gene View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.gene.GeneDataSetView
-
Creates new form AbstractDataSetView
- GeneGenePTTLink - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class populates the GENEINFO_HAS_GENEPTT relationship table
$Author$ $LastChangedDate$ $LastChangedRevision$
- GeneGroup - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneGroup entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneGroup() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- GeneGroup(GeneGroupPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- GeneGroup(long, String, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- GENEGROUP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GeneGroupParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the GeneGroup Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneGroupParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.GeneGroupParser
-
- geneGroupPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- GeneGroupPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneGroupPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneGroupPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- GeneGroupPK(long, String, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- GENEHISTORY - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GeneHistoryParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the GeneHistory Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneHistoryParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.GeneHistoryParser
-
- GENEID - Variable in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- GeneInfo - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneInfo entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneInfo() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- GeneInfo(Long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- GeneInfo(Long, long, long, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- GENEINFO - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENEINFO_HAS_GENEPTT - Static variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENEINFO_HAS_KEGGGENE - Static variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENEINFO_HAS_OMIM - Static variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENEINFO_HAS_ONTOLOGY - Static variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GeneInfoDBXrefs - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneInfoDBXrefs entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneInfoDBXrefs() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- GeneInfoDBXrefs(GeneInfoDBXrefsPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- GeneInfoDBXrefs(long, String, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- GENEINFODBXREFS - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- geneInfoDBXrefsPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- GeneInfoDBXrefsPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneInfoDBXrefsPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneInfoDBXrefsPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- GeneInfoDBXrefsPK(long, String, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- GeneInfoJpaController - Class in org.jbiowh.core.datasets.gene.jpa.controller
-
This class is the GeneInfo Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneInfoJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.jpa.controller.GeneInfoJpaController
-
- GeneInfoListView - Class in org.jbiowh.gui.datasets.gene
-
This Class show the GeneInfo List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-02-07 09:07:45 +0100 (Thu, 07 Feb 2013) $
$LastChangedRevision: 385 $
- GeneInfoListView(Collection<GeneInfo>, JComponent) - Constructor for class org.jbiowh.gui.datasets.gene.GeneInfoListView
-
Create the GeneInfo List object
- GeneInfoParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is the GeneInfo parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneInfoParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.GeneInfoParser
-
- GeneInfoSynonyms - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneInfoSynonyms entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneInfoSynonyms() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- GeneInfoSynonyms(GeneInfoSynonymsPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- GeneInfoSynonyms(long, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- GENEINFOSYNONYMS - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- geneInfoSynonymsPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- GeneInfoSynonymsPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneInfoSynonymsPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneInfoSynonymsPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- GeneInfoSynonymsPK(long, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- GENEINFOWIDDBXREFSTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GENEINFOWIDSYNONYMSTEMP - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GeneKEGGGeneLink - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class is the Gene KEGGGene link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneLinks - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class create all Gene external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneLocation - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML GeneLocation tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneLocation() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
This constructor initialize the WH file manager and the WH DataSet
manager
- GeneLocationTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class staorage the XML GeneLocation on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GeneLocationTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- GENELOCUSTAG - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- GENEMAPFILE - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- GeneMapParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the parser for the OMIM genemap file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneMapParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.GeneMapParser
-
- GeneOMIMLink - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class is the Gene OMIM link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneOntologyLink - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class is the Gene Ontology link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneParser - Class in org.jbiowh.core.datasets.gene.parser
-
This Class is the Gene Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.GeneParser
-
- GenePTT - Class in org.jbiowh.core.datasets.gene.jpa.entities.geneptt
-
This Class is the GenePTT entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GenePTT() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- GenePTT(Long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- GenePTT(Long, long, long, String, String, int, String, String, String, String, String, String, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- GENEPTT - Static variable in class org.jbiowh.core.datasets.gene.parser.GenePTTTables
-
- GENEPTT_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.gene.parser.GenePTTTables
-
- GenePTTComparator - Class in org.jbiowh.core.datasets.gene.utils
-
This class is used as Comparator for Set
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GenePTTComparator() - Constructor for class org.jbiowh.core.datasets.gene.utils.GenePTTComparator
-
- GenePTTDataSetView - Class in org.jbiowh.gui.datasets.gene
-
This Class handled the Chromosome View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-08 14:37:19 +0100
(Thu, 08 Nov 2012) $ $LastChangedRevision: 396 $
- GenePTTDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.gene.GenePTTDataSetView
-
Creates new form AbstractDataSetView
- GenePTTJpaController - Class in org.jbiowh.core.datasets.gene.jpa.controller
-
This class is the GenePTT Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GenePTTJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.jpa.controller.GenePTTJpaController
-
- GenePTTLinks - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class create all GenePTT external relationship tables
$Author$ $LastChangedDate$ $LastChangedRevision$
- GenePTTListView - Class in org.jbiowh.gui.datasets.gene
-
This Class show the GenePTT List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GenePTTListView(Collection<GenePTT>, JComponent) - Constructor for class org.jbiowh.gui.datasets.gene.GenePTTListView
-
Create the GenePTT List object
- GenePTTParser - Class in org.jbiowh.core.datasets.gene.parser
-
This Class is the Gene PTT parser
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-02-07 09:07:45 +0100
(Thu, 07 Feb 2013) $ $LastChangedRevision: 396 $
- GenePTTParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.GenePTTParser
-
- GenePTTTables - Class in org.jbiowh.core.datasets.gene.parser
-
This Class is the GenePTT Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GENEPTTTAXONOMY - Variable in class org.jbiowh.core.datasets.gene.parser.GenePTTTables
-
- GenePTTTaxonomyLink - Class in org.jbiowh.core.datasets.gene.parser.links
-
This Class is populates the GENEPTT_HAS_TAXONOMY relationship table
$Author$
$LastChangedDate$
$LastChangedRevision$
- GenePTTTransfer - Class in org.jbiowh.core.datasets.gene.jpa.transfer
-
This class handled the GenePTT transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GenePTTTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.jpa.transfer.GenePTTTransfer
-
Create the GenePTT transfer
- GenePTTTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.jpa.transfer.GenePTTTransfer
-
Create the GenePTT transfer
- GENERALREFERENCES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- GeneRefSeqUniprot - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneRefSeqUniprot entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneRefSeqUniprot() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- GeneRefSeqUniprot(GeneRefSeqUniprotPK) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- GeneRefSeqUniprot(GeneRefSeqUniprotPK, long) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- GeneRefSeqUniprot(String, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- GENEREFSEQUNIPROT - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- GeneRefseqUniProtParser - Class in org.jbiowh.core.datasets.gene.parser.files
-
This Class is GeneRefseqUniProt Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneRefseqUniProtParser() - Constructor for class org.jbiowh.core.datasets.gene.parser.files.GeneRefseqUniProtParser
-
- geneRefSeqUniprotPK - Variable in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- GeneRefSeqUniprotPK - Class in org.jbiowh.core.datasets.gene.jpa.entities.gene
-
This Class is the GeneRefSeqUniprotPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneRefSeqUniprotPK() - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- GeneRefSeqUniprotPK(String, String) - Constructor for class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- GENERIC - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ManufacturersTags
-
- genericType(Class, String) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a map with the external relationship fields and its class for a
JBioWH entity
- GENES - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- GenesDrugsFromTaxonomyFamily - Class in org.jbiowh.tools.gene
-
This class identify genes encoding for drug target proteins and creating the
drug list from a Taxonomy TaxId
$Author$ $LastChangedDate$ $LastChangedRevision$
- GenesDrugsFromTaxonomyFamily() - Constructor for class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- genesDrugsFromTaxonomyFamily() - Method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
Find genes in a same chromosome distant from a number of pair bases that
encoding drugs target proteins
- GENESYMBOL - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- GeneTables - Class in org.jbiowh.core.datasets.gene.parser
-
This Class is the Gene Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- GeneTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML tags for gene on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GeneTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- GeneTransfer - Class in org.jbiowh.core.datasets.gene.jpa.transfer
-
This class handled the GeneInfo transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GeneTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.gene.jpa.transfer.GeneTransfer
-
Create the GeneInfo transfer
- GeneTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.gene.jpa.transfer.GeneTransfer
-
Create the GeneInfo transfer
- getAbbreviation() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getAbsorption() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getAbstract1() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getAcc() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getACC() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ACC Tags
- getACCESSION() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getAccessionNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getAccessionNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getAffectedOrganisms() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getAHFSCodes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getALIASFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getAliEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getAliEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getAliStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getAliStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getALLERGENNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getAllSQL() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get all SQL sentences
- getAlt() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Gets the value of the alt property.
- getAlt() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Gets the value of the alt property.
- getALTERNATIVENAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getAltId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- getALTID() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ALTID Tags
- getApplication() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the the DataSet's application name
- getApplicationVersion() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's application version
- getApproved() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getArchitecture() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getArchitectureAcc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getAssembly() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getATCCode() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getAttribType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- getAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getATTRIBUTEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getATTRIBUTELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getAttribValue() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- getAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- getAutoPfamseq() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- getAv() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getAvailability() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- getAVAILABILITYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AvailabilityTags
-
- getAVAILABILITYLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AvailabilityListTags
-
- getAvailabilityRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getAVAILABILITYREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getAverageCoverage() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getAverageLength() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getBase() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getBASEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getBasicData() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the basic data to show
- getBasicData() - Method in class org.jbiowh.gui.datasets.disease.OMIMDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.drug.DrugBankDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.gene.GeneDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.gene.GenePTTDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.ontology.OntologyDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.protein.ProteinDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.protfam.ProtFamDataSetView
-
- getBasicData() - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyDataSetView
-
- getBEGINFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getBEGINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getBeginIntervalBegin() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getBeginIntervalEnd() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getBEGININTERVALFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getBeginPos() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getBeginPosition() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getBeginStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getbGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getBGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getBgcolor() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the bgcolor property.
- getBIBREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BibrefTags
-
- getBIOLOGICALROLEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getBIOTECHNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getBiotransformation() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getBondEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getBondStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getBottomFixedCount() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the number of items fixed at the bottom of the menu or popup
menu.
- getBrand() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getBuildMethod() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getcASNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCASNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCategory() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- getCd() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- getCDANTIGENNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getCellToEdgeMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
- getCellToVertexMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
- getCELLTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getChain() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getChain() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getChain() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getChangeDate() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's change date
- getChangeStatus() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getChecksum() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getChecksum() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getCHECKSUMFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getChromosome() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getCigar() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getCigar() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getCigar() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getCite() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getCitId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getCitKey() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getClanAcc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanAuthor() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanDescription() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClanId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getClass1() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getClass1() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- getClass1() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- getClearance() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCn() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- getCode() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getCode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getCode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getCog() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getCollection() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the collection
- getCollectionColumns(T) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Return the field to be visualized from the collection
- getCollectionColumns(OMIM) - Method in class org.jbiowh.gui.datasets.disease.OMIMListView
-
- getCollectionColumns(PfamAbioWH) - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
- getCollectionColumns(DrugBank) - Method in class org.jbiowh.gui.datasets.drug.DrugBankListView
-
- getCollectionColumns(GeneInfo) - Method in class org.jbiowh.gui.datasets.gene.GeneInfoListView
-
- getCollectionColumns(GenePTT) - Method in class org.jbiowh.gui.datasets.gene.GenePTTListView
-
- getCollectionColumns(Ontology) - Method in class org.jbiowh.gui.datasets.ontology.OntologyListView
-
- getCollectionColumns(KEGGCompound) - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundListView
-
- getCollectionColumns(KEGGEnzyme) - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeListView
-
- getCollectionColumns(KEGGGene) - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneListView
-
- getCollectionColumns(KEGGGlycan) - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanListView
-
- getCollectionColumns(KEGGPathway) - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayListView
-
- getCollectionColumns(KEGGReaction) - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- getCollectionColumns(Protein) - Method in class org.jbiowh.gui.datasets.protein.ProteinListView
-
- getCollectionColumns(UniRefEntry) - Method in class org.jbiowh.gui.datasets.protfam.UniRefEntryListView
-
- getCollectionColumns(Taxonomy) - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the collection element from the table row
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.disease.OMIMListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.drug.DrugBankListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.gene.GeneInfoListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.gene.GenePTTListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.ontology.OntologyListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.protein.ProteinListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.protfam.UniRefEntryListView
-
- getCollectionElementFromTableRow(int) - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyListView
-
- getColumn(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the column from its key in the handler
- getColumn(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the column from its number in the handler
- getColumnClass(int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- getColumnCount() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the number of columns in the table
- getColumnCount() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- getColumnKey(SQLTableColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the columns key in the handler.
- getColumnKey(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return the columns key in the handler.
- getColumnName(int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- getColumns() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's columns
- getColumns() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's columns
- getColumns() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Return the column's handler
- getColumnSet() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Return a list of the columns sorted by its internal number
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getComment() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getComment() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getCOMMENT() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the COMMENT Tags
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getComment() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getComment() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getCOMMENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getComments() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getCOMMENTTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getCOMPARTMENTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getCompeted() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getComponent() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the component property.
- getComponent() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getCOMPONENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getComposition() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getCONFIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- getCONFIDENCELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceListTags
-
- getCONFLICTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getConn() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL connection
- getConn() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL connection
- getCONSIDER() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the CONSIDER Tags
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getConstrainFieldOnEntity() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the constrain field definition on the entity
- getConstrainObject(int) - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
- getConstrains() - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Get the constrains
- getConstrains() - Method in class org.jbiowh.gui.component.panel.ConstrainPanel
-
- getConstrains() - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getContents() - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
Return the SQLTable object
- getContents() - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Get the extended data
- getContents() - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
Return the data object
- getContentsData(int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Get the ExtendedModelData data in the column in a List form
- getController() - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyGraph
-
- getController(Class) - Method in class org.jbiowh.core.utility.controller.AbstractController
-
Get the JPA controller and check is it is created or not
- getCoord() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getCoords() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the coords property.
- getCost() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getCountry() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getCreated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getCreated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getCreated() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getCreated() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getCREATED() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getCs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getCurrency() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getCurrent() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Get the current gene on the chromosome list
- getCurrentSQLLine() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the current SQL line
- getCytogLoc() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getCytogLog() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getData() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getData() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getData() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- getData() - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Get the data list
- getDataAt(int) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getDataAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
Get the data at selected position
- getDataSet() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getDataSet() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDataSet() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDataSet() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getDataSet() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getDataset() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the DataSet object loaded
- getDataSet() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getDataSet() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getDataSet() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getDataSet() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getDataSet() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDATASET() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getDataSet() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getDataSetCount() - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
Count all DataSet entities objects
- getDataSetIn() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDataSetObject() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the DataSet Object View
- getDataSetReport() - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getDataSetWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getDate() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getDay() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getDb() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getdBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getDBAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getDBACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getDBFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getDbId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getDbId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getDbLink() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getDbLink() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getDBMSDataTypes() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return a list of all the data types supported by this database
- getDBMSDataTypes() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return a list of all the data types supported by this database
- getDBMSIndexTypes() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return a array of all the index types supported by this database
- getDBMSIndexTypes() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return a array of all the index types supported by this database
- getDBName() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- getDBName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getDBNAME() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DBNAME Tags
- getDBREFERENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getDBREFERENCETYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getDBXREF() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DBXREF Tags
- getDef() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getDEF() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DEF Tags
- getDef() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Return the column's default value
- getDefinition() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getDefinition() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getDEFSTR() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the DEFSTR Tags
- getDepositedBy() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDepositedBy() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getDescription() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDescription() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDescription() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- getDescription() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getDescription() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getDescription() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getDESCRIPTIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getDirectory() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the data source directory
- getDisease() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getDisorder() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getDisplayed() - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Get the displayed list
- getDivision() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getDomain() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getDomainBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getDomainBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getDomainBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDomainEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getDomainEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getDomainEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDOMAINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getDomainGA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDomainNC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDomainOder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDomainOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getDomainScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getDomainTC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getDriver() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL JAVA driver
- getDriver() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL JAVA driver
- getDrug() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- getDrug() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drugs
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDrugBank() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankAffectedOrganisms() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankAHFSCodes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankAsCarriers() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankAsEnzyme() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankAsTransporters() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getDrugBankATCCodes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankBrands() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCalculatedProperties() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getDrugBankCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getDrugBankCarriersActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBankCarriersRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBankCarriersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getDrugBankCarriersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getDrugBankCategories() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankCount() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- getDrugBankDosages() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankDrugInteractions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankDrugInteractionsPK() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- getDrugBankEnzymes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankEnzymes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getDrugBankEnzymes() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getDrugBankEnzymesActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBankEnzymesRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBankEnzymesWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getDrugBankEnzymesWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getDrugBankExperimentalProperties() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankExternalIdentifiers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankExternalLinks() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankFoodInteractions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankGeneralRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankGroup() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankLink(boolean, Collection<DrugBank>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the DrugBank action
- getDrugBankManufacturers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankMixtures() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankPackagers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankPatents() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankPrices() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankProteinSequences() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBanks() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getDrugBankSecondAccessionNumbers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankSynonyms() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTargets() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTargets() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getDrugBankTargets() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getDrugBankTargetsActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBankTargetsRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBankTargetsWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getDrugBankTargetsWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getDrugBankTaxonomy() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTaxonomySubstructures() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getDrugBankTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getDrugBankTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getDrugBankTransportersActions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDrugBankTransportersRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDrugBankTransportersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getDrugBankTransportersWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getDrugBankWID() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getDsspCode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getEd() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- getEdgeToCellMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
- getEdit() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Return the default edit array for each column
- getEditCell() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Return the edit matrix for all the cells
- getEditorComponent() - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- getElement() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- geteMBLCode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getENDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getENDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getEndFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndIntervalBegin() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndIntervalEnd() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getENDINTERVALFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getEndPos() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getEndPosition() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndPositionOnTheGenomicAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getEndShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getEndStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getENDSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getEngine() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's engine
- getEnsemblGeneIdentifier() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getEnsemblProteinIdentifier() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getEnsemblRNAIdentifier() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getEntities() - Method in class org.jbiowh.core.utility.jparelationship.JpaEntitiesSelected
-
Return the list of entities to be inserted on the JBioWH copy process
- getEntityManager() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.controller.DrugBankJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GeneInfoJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GenePTTJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.mainloader.controller.DataSetJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Get the EntityManagerFactory
- getEntityManager() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- getEntityManager() - Method in class org.jbiowh.core.utility.controller.AbstractJpaController
-
This method return the Persistence EntityManager
- getEntries() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the entry property.
- getENTRY() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getEntry() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Uniprot
-
- getEntry1() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the entry1 property.
- getEntry2() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the entry2 property.
- getENTRYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntryTags
-
- getEntrySet() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.MIF25
-
- getENTRYSETFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getEquation() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getError() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getERRORFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getEVENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getEventType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getEvidence() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- getEVIDENCE() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- getEVIDENCE() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getEVIDENCEDSTRINGTYPE() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getEVIDENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- getExistence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getEXPERIMENTALINTERACTORFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorTags
-
- getEXPERIMENTALINTERACTORLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorListTags
-
- getEXPERIMENTALPREPARATIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTALPREPARATIONLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTALROLEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTALROLELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getEXPERIMENTDESCRIPTIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getEXPERIMENTLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentListTags
-
- getExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- getExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getEXPERIMENTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentListTags
-
- getEXPERIMENTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentRefListTags
-
- getEXPERIMENTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getEXPERIMENTREFLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentRefListTags
-
- getExperiments() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getEXPERIMENTSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getExpires() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getExponent() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getEXPONENTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getExtOperation() - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Get the operation between constrains
- getFactor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getFACTORFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getFasta(Object) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Verify if the object is a Protein entity and return the Fasta format for
this protein
- getFastaFormat() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getFastaFromCollection(Collection) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Get a list with all fields to be printed from a Dataset collection
- getFEATUREDETECTIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getFEATUREDETECTIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getFEATUREFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getFEATUREFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getFEATURELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureListTags
-
- getFEATURERANGEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getFEATURERANGELISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeListTags
-
- getFEATURETYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getfGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getFGColor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getFgcolor() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the fgcolor property.
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getFieldAfterWhere() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the SQL syntax to put after WHERE
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getFieldBeforeWhere() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the SQL syntax to put before WHERE
- getFieldId() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getFieldId() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the field that will be used as Id on queries
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getFieldOnEntity() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getFieldOnEntity() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the field definition on the entity
- getFields() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Return a Set Object with the field tags used by the Entry
- getFields() - Method in interface org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFactory
-
- getFields() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the available search fields
- getFieldsSet() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the available search fields
- getFieldValue() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Return the field HashMap where the Entry data is storage
- getFieldValue() - Method in interface org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFactory
-
- getFileAbsolutName(String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Get the file name with full path from a File name.
- getFileExtensions(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the available file extension to each kind of Dataset
- getFirst() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the first gene on the chromosome
- getFoodInteractions() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getForm() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getFormula() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getForwardLambda() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getForwardTau() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getFragment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getFragment() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getFRAGMENTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getFullConsensus() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getFullName() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Get the fullName value
- getFULLNAMEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getFULLNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getFullNameFromNomenclatureAuthority() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getGenCodeId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getGene2Accession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGene2AccessionPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getGene2Ensembl() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGene2PMID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGene2PMIDPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- getGene2STS() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGene2STSPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- getGene2UniGene() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGene2UniGenePK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- getGENEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getGeneGroup() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGeneGroupPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- getGeneId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getGeneID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getGeneInfo() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getGeneInfoCount() - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GeneInfoJpaController
-
- getGeneInfoDBXrefs() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGeneInfoDBXrefsPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- getGeneInfos() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getGeneInfos() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getGeneInfoSynonyms() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGeneInfoSynonymsPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- getGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- getGeneLink(boolean, Object) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Gene action
- getGENELOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getGENELOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getGeneLocusTag() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getGenePosition() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the gene position in the Chromosome
- getGenePTT() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getGenePTT() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getGenePTTCount() - Method in class org.jbiowh.core.datasets.gene.jpa.controller.GenePTTJpaController
-
- getGenePTTs() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the list of genes on the chromosome
- getGeneRefSeqUniprotPK() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- getGeneric() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getGeneStatus() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getGeneSymbol() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getGenomicNucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getGenomicNucleotideAccessionVersion() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getGenomicNucleotideGi() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getGraph() - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
Get the T tree in a graph object
- getGraph() - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return the graph generated for the entities classes
- getGraphDijkstraShortestPath(Object, Object) - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
- getGraphics() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the graphics property.
- getGrouping() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getGroupName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getHalfLife() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getHeader() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getHeader() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GO
-
- getHEADER() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOHeaderTags
-
Get the HEADER tag
- getHeight() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getHeight() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the height property.
- getHexColour() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getHomeURL() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the the DataSet's Home URL
- getHOSTORGANISMFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.HostOrganismListTags
-
- getHOSTORGANISMLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.HostOrganismListTags
-
- getIcon(String) - Method in class org.jbiowh.gui.component.icons.IconFetch
-
Return the ImageIcon from its file name
- getId() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getId() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- getId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- getID() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOCommonTags
-
Get the ID tag
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Component
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Gets the value of the id property.
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- getId() - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- getId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getId(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the identifier for each DataSet entity
- getId1() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getId2() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getIdentifier() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AvailabilityTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- getImage() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getImage() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the image property.
- getImexId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getIMEXIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getIndex(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index from its key in the handler
- getIndex(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index from its number in the handler
- getIndexColumn(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index column by its name
- getIndexColumn(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index column by its number
- getIndexColumnCount() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the number of columns included in the index
- getIndexColumnKey(SQLTableIndexColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the map's key for the column
- getIndexColumnKey(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the map's key for the column
- getIndexColumnKey(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the map's key for the column
- getIndexCount() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the number of indexes in the table
- getIndexes() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's indexes
- getIndexes() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Return the index's handler
- getIndexes() - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
Return the SQL index handler
- getIndexKey(SQLTableIndex) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index key in the handler.
- getIndexKey(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index key in the handler.
- getIndexKey(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return the index key in the handler.
- getIndexName() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Get the active index's name showed on the Index Column table
- getIndexSet() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Return a list of the index sorted by its internal number
- getIndication() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getINFERREDINTERACTIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getINFERREDINTERACTIONLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionListTags
-
- getInFull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getInFull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getIngredients() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getInheritedDivision() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getInheritedGencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getInheritedMCGencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getInitialLevel() - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the initial information level to print the messages
- getINNNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getInstance() - Static method in class org.jbiowh.core.datasets.disease.omim.parser.links.OMIMLinks
-
Return a OMIMLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
Get the OMIM tables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamLinks
-
Return a PFamLinks instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamOntologyLink
-
Return a PFamOntologyLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamProteinLink
-
Return a PFamProteinLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.links.PFamTaxonomyLink
-
Return a PFamTaxonomyLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
Return a PFamTables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
Return the DrugBank tables instance
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.links.DrugBankProteinLink
-
Return a DrugBankProteinLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.AffectedOrganismsTags
-
Return a AffectedOrganismsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.AHFSCodesTags
-
Return a AHFSCodesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ATCCodesTags
-
Return a ATCCodesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BondTypeTags
-
Return a BondTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BrandsTags
-
Return a BrandsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CalculatedPropertiesTags
-
Return a CalculatedPropertiesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CarriersTags
-
Return a CarriersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.CategoriesTags
-
Return a CategoriesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DosagesTags
-
Return a DosagesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugInteractionsTags
-
Return a DrugInteractionsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
Return a DrugTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.EnzymesTags
-
Return a EnzymesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExperimentalPropertiesTags
-
Return a ExperimentalPropertiesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalIdentifiersTags
-
Return a ExternalIdentifiersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalLinksTags
-
Return a ExternalLinksTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.FoodInteractionsTags
-
Return a FoodInteractionsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.GroupsTags
-
Return a GroupsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.IdentifiersTypeTags
-
Return a IdentifiersTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ManufacturersTags
-
Return a ManufacturersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.MixturesTags
-
Return a MixturesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PackagersTags
-
Return a PackagersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
Return a PatentsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
Return a PFamsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
Return a PricesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
Return a PropertyTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ProteinSequencesTags
-
Return a ProteinSequencesTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SecondaryAccessionNumbersTags
-
Return a SecondaryAccessionNumbersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SynonymsTags
-
Return a SynonymsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TargetBondTypeTags
-
Return a TargetBondTypeTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TargetsTags
-
Return a TargetsTags
- getInstance() - Static method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TransportersTags
-
Return a TransportersTags
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.GenePTTTables
-
Return a GenePTTTables
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
Return a GeneTables
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GeneGenePTTLink
-
Return a GeneGenePTTLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GeneKEGGGeneLink
-
Return a GeneKEGGGeneLink
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GeneLinks
-
Return a GeneLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GeneOMIMLink
-
Return a GeneOMIMLink
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GeneOntologyLink
-
Return a GeneOntologyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GenePTTLinks
-
Return a GenePTTLinks instance
- getInstance() - Static method in class org.jbiowh.core.datasets.gene.parser.links.GenePTTTaxonomyLink
-
Return a GenePTTTaxonomyLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the DataSetFactory object
- getInstance() - Static method in class org.jbiowh.core.datasets.mainloader.DataSetsTables
-
- getInstance() - Static method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Return a WIDFactory
- getInstance() - Static method in class org.jbiowh.core.datasets.ontology.parser.links.OntologyLinks
-
Return a OntologyLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
Return a OntologyTables
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
Return a
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.PathwayPrintOnTSVFile
-
Return a PathwayPrintOnTSVFile
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGCompoundDrugBankLink
-
Return a KEGGCompoundDrugBankLink
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGLinks
-
Return a KEGGLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGPathwayGeneInfoLink
-
Return a KEGGPathwayGeneInfoLink
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGPathwayProteinLink
-
Return a KEGGPathwayProteinLink
- getInstance() - Static method in class org.jbiowh.core.datasets.pathway.kegg.parser.links.KEGGPathwayTaxonomyLink
-
Return a KEGGPathwayTaxonomyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.ppi.parser.links.MIF25Links
-
Return a MIF25Links
- getInstance() - Static method in class org.jbiowh.core.datasets.ppi.parser.links.MIF25ProteinLink
-
Return a MIF25ProteinLink
- getInstance() - Static method in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
Return a MIF25Tables
- getInstance() - Static method in class org.jbiowh.core.datasets.protclust.parser.links.UniRefLinks
-
Return a UniRefLinks
- getInstance() - Static method in class org.jbiowh.core.datasets.protclust.parser.links.UniRefProteinLink
-
Return a UniRefProteinLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protclust.parser.UniRefTables
-
Return a UniRefTables
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinGeneLink
-
Return a ProteinGeneLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinGenePTTLink
-
Return a ProteinGenePTTLink instance
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinKEGGEnzymeLink
-
Return a ProteinKEGGEnzymeLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinOntologyLink
-
Return a ProteinOntologyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.links.ProteinTaxonomyLink
-
Return a ProteinTaxonomyLink
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
Return a ProteinTables
- getInstance() - Static method in class org.jbiowh.core.datasets.protein.utils.ProteinUtils
-
Return a ProteinUtils instance
- getInstance() - Static method in class org.jbiowh.core.datasets.taxonomy.parser.links.TaxonomyLinks
-
Return a
- getInstance() - Static method in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
Return a TaxonomyTables
- getInstance() - Static method in class org.jbiowh.core.dbms.transfer.TransferData
-
Return a TransferData instance
- getInstance() - Static method in class org.jbiowh.core.dbms.WHDBMS
-
Return a WHDBMS
- getInstance() - Static method in class org.jbiowh.core.logger.VerbLogger
-
Return a VerbLogger
- getInstance() - Static method in class org.jbiowh.core.utility.jparelationship.JpaEntitiesSelected
-
Return a JpaEntitiesSelected instance
- getInstance() - Static method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a JpaRelationship instance
- getInstance() - Static method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Return a BioWHPattern
- getInstance() - Static method in class org.jbiowh.core.utility.utils.BioWHTime
-
Return a BioWHTime
- getInstance() - Static method in class org.jbiowh.core.utility.utils.ExploreDirectory
-
Return a ExploreDirectory
- getInstance() - Static method in class org.jbiowh.core.utility.utils.ParseFiles
-
Return a ParseFiles
- getInstance() - Static method in class org.jbiowh.core.utility.utils.ReadLinesToList
-
Return a ReadLinesToList instance
- getInstance() - Static method in class org.jbiowh.core.utility.utils.SavedResults
-
Return a SavedResults
- getInstance() - Static method in class org.jbiowh.gui.component.icons.IconFetch
-
Return a IconFetch instance
- getInstance() - Static method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Return a ResultPanelFactory
- getInstance() - Static method in class org.jbiowh.gui.component.panel.sql.syntax.SQLFunctionsAndOperators
-
Return a SQLFunctionsAndOperators
- getInstance() - Static method in class org.jbiowh.gui.component.panel.sql.syntax.SQLReservedWords
-
Return a SQLReservedWords
- getInstance() - Static method in class org.jbiowh.gui.component.panel.sql.syntax.SQLSpecialChar
-
Return a SQLSpecialChar
- getInstance() - Static method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Return a EntityParserFieldProxy
- getInstance() - Static method in class org.jbiowh.gui.datasets.ListViewProxy
-
Return a ListViewProxy
- getIntactID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getINTACTIDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getINTERACTANTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getINTERACTIONDETECTIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getINTERACTIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getINTERACTIONLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionListTags
-
- getInteractionRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getINTERACTIONREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getINTERACTIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getINTERACTORFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getINTERACTORLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorListTags
-
- getInteractorRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getInteractorRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getINTERACTORREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentalInteractorTags
-
- getINTERACTORREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getINTERACTORTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getInterproId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getInterval() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the scroll interval in milliseconds
- getIntraMolecular() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getINTRAMOLECULARFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getIntResult(String, String) - Method in class org.jbiowh.core.utility.utils.SavedResults
-
Get internal result
- getISA() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ISA Tags
- getIsAOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- getIsAOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- getIsLink() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getISLINKFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getISOBSOLETE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the ISOBSOLETE Tags
- getISOFORMFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getISOFORMTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getIsRepresentative() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getItem() - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- getjBClose() - Method in class org.jbiowh.gui.JBioWH
-
- getjBOpen() - Method in class org.jbiowh.gui.JBioWH
-
- getjBSearch() - Method in class org.jbiowh.gui.JBioWH
-
- getjCDataSet() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getjFileChooser1() - Method in class org.jbiowh.gui.component.file.FileChooser
-
Get the JFileChooser component
- getJgraphStyle(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the identifier for each DataSet entity
- getjLConstrains() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getjLFound() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the found label
- getjLProgress() - Method in class org.jbiowh.gui.component.dialog.progress.ProgressDialog
-
- getjMClose() - Method in class org.jbiowh.gui.JBioWH
-
- getjMEdit() - Method in class org.jbiowh.gui.JBioWH
-
- getjMOpen() - Method in class org.jbiowh.gui.JBioWH
-
- getjMOpenSQLScript() - Method in class org.jbiowh.gui.JBioWH
-
- getjMSQL() - Method in class org.jbiowh.gui.JBioWH
-
- getjMTabs() - Method in class org.jbiowh.gui.JBioWH
-
- getJournal() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getJpaExternalRelationship(Class, EntityManagerFactory) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a map with the external relationship fields and its class for a
JBioWH entity
- getJpaExternalRelationship(Class, EntityManager) - Method in class org.jbiowh.core.utility.jparelationship.JpaRelationship
-
Return a map with the external relationship fields and its class for a
JBioWH entity
- getJpqlQuery(List, JPLConstrains) - Method in class org.jbiowh.core.dbms.sql.JPQLBuilder
-
This method create the JPL query
- getjProgressBar() - Method in class org.jbiowh.gui.component.dialog.progress.ProgressDialog
-
- getjScrollPane1() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getjSQLEditor() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the SQL editor pane
- getjTabbedPane2() - Method in class org.jbiowh.gui.JBioWH
-
- getjTable() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the Table
- getjTDataSets() - Method in class org.jbiowh.gui.component.panel.HomePanel
-
Get the Dataset Table
- getjTreeResult() - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Get the TreeResult
- getjTSearch() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getkEGGCompound() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- getkEGGCompound() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getkEGGCompound() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getkEGGCompoundAsCofactor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGCompoundAsEffector() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGCompoundAsInhibitor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGCompoundAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGCompoundAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getKEGGCompoundCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- getkEGGCompoundDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getKEGGCompoundDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- getKEGGCompoundLink(boolean, Collection<KEGGCompound>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGCompound action
- getkEGGCompoundName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGCompounds() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getkEGGCompounds() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getKEGGCompoundWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- getkEGGCompoundWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getKEGGCompoundWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getkEGGEnzyme() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGEnzymeAsCofactor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGEnzymeAsEffector() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGEnzymeAsInhibitor() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGEnzymeClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- getkEGGEnzymeDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- getKEGGEnzymeLink(boolean, Collection<KEGGEnzyme>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Enzyme action
- getkEGGEnzymeName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGEnzymeNameDirectly() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGEnzymeOrthology() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeOrthologyPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- getkEGGEnzymes() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGEnzymes() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getkEGGEnzymeSysName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- getkEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- getkEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getKEGGEnzymeWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getKeggFileName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFile
-
Get the KEGG file name
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getkEGGGene() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- getKEGGGeneCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- getkEGGGeneDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getKegggenedblinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- getKEGGGeneDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- getkEGGGeneDisease() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGGeneDrugTarget() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getKEGGGeneDrugTargetPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- getKEGGGeneLink(boolean, Collection<KEGGGene>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGGene action
- getkEGGGeneName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGGeneNameDirectly() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGGeneOrthology() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getKEGGGeneOrthologyPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- getkEGGGenes() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getkEGGGenes() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- getkEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- getkEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getKEGGGeneWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- getkEGGGlycan() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- getkEGGGlycan() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getkEGGGlycanAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGGlycanAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGGlycanClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKEGGGlycanCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- getkEGGGlycanDBLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKeggglycandblinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- getKEGGGlycanDBLinkPK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- getKEGGGlycanLink(boolean, Collection<KEGGGlycan>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGGlycan action
- getkEGGGlycanName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKEGGGlycanWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- getkEGGGlycanWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getKEGGGlycanWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getkEGGPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getkEGGPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getkEGGPathway() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getKEGGPathwayCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- getkEGGPathwayEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGPathwayEntry() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getkEGGPathwayEntryGraphic() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getkEGGPathwayEntryWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getKEGGPathwayEntryWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getKEGGPathwayLink(boolean, Collection<KEGGPathway>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGPathway action
- getkEGGPathwayReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGPathwayRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGPathwayRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- getkEGGPathwayRelationSubType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getKeggpathwayrelationsubtypePK() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- getKEGGPathwayRelationWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGPathways() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getkEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getKEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getkEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getKEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getkEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getKEGGPathwayWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getkEGGReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getkEGGReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getkEGGReactionAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGReactionAsProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getkEGGReactionAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getkEGGReactionAsSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getKEGGReactionCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- getKEGGReactionLink(boolean, Collection<KEGGReaction>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the KEGGReaction action
- getkEGGReactionName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getkEGGReactions() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getkEGGReactionWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getKEGGReactionWID() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getkEGGRPair() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getKEGGRPairCount() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- getKEYFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getKEYWORDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- getKeywords() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getKind() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getKind() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getKingdom() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getKnownAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getLabel() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- getLabel() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getLABELFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- getLast() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the last gene on the chromosome
- getLength() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getLength() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the column's length
- getLENGTHFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getLevel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getLevel() - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the information level to print the messages
- getLEVELFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getLink() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the link property.
- getLink() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the link property.
- getLINKFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getLinks() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the basic data to show
- getLinks() - Method in class org.jbiowh.gui.datasets.disease.OMIMDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.domain.pfam.PFamDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.drug.DrugBankDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.gene.GeneDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.gene.GenePTTDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.ontology.OntologyDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.KEGGPathwayDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.protein.ProteinDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.protfam.ProtFamDataSetView
-
- getLinks() - Method in class org.jbiowh.gui.datasets.taxonomy.TaxonomyDataSetView
-
- getListToPrint(Collection, String) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the fields to print for a collection of DataSet and the file name
- getListToPrint(Object, String) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the fields to print for a collection of DataSet and the file name
- getLoadDate() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's load date
- getLoadedBy() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's load user
- getLoadedByDefault() - Method in class org.jbiowh.core.utility.jparelationship.JpaEntitiesSelected
-
Return the JBioWH entity's names that always are inserted during the
JBioWH copy process
- getLocation() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getLOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getLOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getLocationType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getLOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getLOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getLocusTag() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getLogger() - Static method in class org.jbiowh.core.logger.VerbLogger
-
Return the logger
- getLongColumnLabel(String, String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Get the integer columnLabel value returned by the SQL sentence
- getLongColumnLabel(String, String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Get the integer columnLabel value returned by the SQL sentence
- getMainField() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getMainField() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getMainField() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getMainField() - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- getMainField() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getMainField() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getMainField() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getMainField() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getMainField() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getMainField() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getMainField() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the main field name used it in the search
- getMainURLParsed() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the URL without the jdbc:// prefix
- getMainURLParsed(WHDBMSFactory) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the URL without the jdbc:// prefix
- getManufacturer() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getMapLocation() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getMass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getMass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getMass() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getMass() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getMass() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getMASSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getMASSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getMcgencode() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getMechanismOfAction() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getMessages() - Method in exception org.jbiowh.core.utility.controller.exceptions.IllegalOrphanException
-
- getMethod() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- getMethod() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getMethod() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getMETHODFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifBioSourceTypeCellType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifBioSourceTypeCompartment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifBioSourceTypeTissue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifBioSourceTypeTissueD() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifEntryExperiment() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIFEntryExperimentCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- getmIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getmIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getmIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMIFEntryExperimentWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifEntryInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getmIFEntryInteraction() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getMIFEntryInteractionCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- getmIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getmIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getmIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMIFEntryInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifEntryInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMIFEntryInteractorCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- getmIFEntryInteractorWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMIFEntryInteractorWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getmIFEntrySet() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMIFEntrySetCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- getMifEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getmIFEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getmIFEntrySetEntry() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMIFEntrySetEntryCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMIFEntrySetEntryWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getmIFEntrySetWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifEntrySource() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMIFEntrySourceCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifExperimentFeatDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifExperimentInterDetecMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifExperimentPartIdentMethod() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifFeatureFeatDetMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifFeatureFeatureRange() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifFeatureFeatureType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifInferredInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMIFInferredInteractionParticipantPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getmIFInferredInteractionParticipantPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getMifInteractionInferredInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifInteractionInferredInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getMifInteractionInferredInteraction() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMIFInteractionInferredInteractionWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifInteractionInteractionType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getMifInteractionParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMIFInteractionParticipantCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- getmIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMIFInteractionParticipantWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifInteractorInteractorType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherAlias() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifOtherAttribute() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherAvailability() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getmIFOtherAvailabilityPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getMIFOtherAvailabilityPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- getMifOtherBibRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getmIFOtherBibRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherBibref() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherBibref() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherBioSourceType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMIFOtherBioSourceTypeCount() - Method in class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- getmIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getmIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getmIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMIFOtherBioSourceTypeWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifOtherConfidence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getmIFOtherExperimentRefPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMIFOtherExperimentRefPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getmIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIFOtherWID() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- getMifOtherWIDExperimentRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getmIFOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefGO() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefPubMed() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefRefSeq() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getMifOtherXRefUniprot() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantBiologicalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifParticipantExperimentalInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getMifParticipantExperimentalInteractor() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantExperimentalPreparation() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantExperimentalRole() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantFeature() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getmIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getMIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getmIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getMIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getmIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMIFParticipantFeatureWID() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getMifParticipantParameter() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMifParticipantParameter() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMIFParticipantParameterPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getmIFParticipantParameterPK() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getMifParticipantPartIdentMeth() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getMIMNumber() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getMIMNumber() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getMinorVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getMINORVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getModelEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getModelEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getModelEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getModelled() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getMODELLEDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getModelLength() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getModelStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getModelStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getModelStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getModificationDate() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getModified() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getModified() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getMODIFIED() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getMODIFIEDFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getMolecule() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getMOLECULEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getMonth() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getMouseCorr() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getMsvLambda() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getMsvMu() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getName() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getName() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's name
- getName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- getName() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getNAME() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOCommonTags
-
Get the NAME tag
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Alt
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Gets the value of the name property.
- getName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getName() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- getNAME() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getName() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getName() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Return the table's name
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Return the column's name
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's name
- getName() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the column's name
- getNameAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getNAMEACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getNameClass() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- getNameClass() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.AttributeListTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getNames() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- getNAMESFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getNameSpace() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getNAMESPACE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the NAMESPACE Tags
- getNCBITAXIDFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getNegative() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getNEGATIVEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- getNext() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the next gene to the current
- getNodes() - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Get the nodes list
- getNomenclatureStatus() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getNoSeqs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getNote() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getNoteEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getNOTEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getNumber() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getNumber() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getNumber() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getNumber() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the number property.
- getNumber() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Return the column's number
- getNumber() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's number
- getNumber() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the column's number
- getNumberArchs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberArchs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberArchs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumberMeta() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberNcbi() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberSequences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumberShuffledHits() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumberStructures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumberStructures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getNumberStructures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getNumDistinctRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getNumFull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumProteins() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getNumSeed() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getNumTotalRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getObserved() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- getOmim() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- getOmim() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getOmimAVs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMCDPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- getOmimCDs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMCNPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- getOmimCNs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMCount() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- getOmimCS() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getOmimCSDatas() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getOmimCSs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimcsWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getOMIMEDPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- getOmimEDs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getoMIMGeneMaps() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- getoMIMGeneMaps() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getOmimId() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimId() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getoMIMMethods() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getoMIMMorbidMaps() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getOmimRFs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimSAs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMTIPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- getOmimTIs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOMIMTXPK() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- getOmimTXs() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- getOmimWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- getOntology() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- getOntology() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getOntologyAlternativeId() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyAlternativeIdPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- getOntologyCount() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- getOntologyhasOntologySynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyhasOntologySynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- getOntologyhasOntologySynonymPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- getOntologyIsA() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyIsAPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- getOntologyLink(boolean, Collection<Ontology>) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Ontology action
- getOntologyPMID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyPMIDPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- getOntologyRelation() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyRelationPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getOntologySubset() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologySynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- getOntologySynonymCount() - Method in class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- getOntologySynonymWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- getOntologyToConsider() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOntologyToConsiderPK() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- getOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- getOntologyXRef() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getOperation() - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Get the Operation over constrain
- getOrder() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Return the the column's order
- getOrderAdded() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- getOrderAdded() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- getOrderNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- getOrderNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- getOrg() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getOrg() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the org property.
- getORGANISMFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getORGANISMFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getORGANISMHOSTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getOrganismsDiffer() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getORGANISMSDIFFERFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getORGANISMTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- getOrientation() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getOrientation() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getORIENTATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getOriginal() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getORIGINALFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getOtherDesignations() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getOtherGeneInfoWID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- getOtherOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getOtherOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- getOtherParams() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getOtherParams() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getOtherPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getOtherWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getOutput() - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the PrintStream used to print the messages
- getPARAMETERFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getPARAMETERLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterListTags
-
- getParentTaxId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getParm() - Method in class org.jbiowh.core.dbms.sql.JPQLBuilder
-
- getParticipant() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- getPARTICIPANTFEATUREREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getPARTICIPANTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getPARTICIPANTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getPARTICIPANTIDENTIFICATIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ExperimentDescriptionTags
-
- getPARTICIPANTIDENTIFICATIONMETHODFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getPARTICIPANTIDENTIFICATIONMETHODLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- getPARTICIPANTLISTFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantListTags
-
- getPARTICIPANTREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- getParticipantType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getPartner() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drugs
-
- getPasswd() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL DB password
- getPasswd() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL DB password
- getPatterList(BufferedReader, String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMBasicParser
-
Get a list with all fields into a OMIM field
- getPdbEndIcode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPdbId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getPdbInsertCode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPdbRes() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPdbResEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPdbResStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPdbSeqNumber() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPdbStartIcode() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPercentageId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getPfamA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getPfamAacc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamACount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- getPfamADatabaseLinkses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAhasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAhasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getPfamAhasPfamLiteratureReferencesPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getPfamAid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAInsignificant() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPfamANCBIRegs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamAPDBRegs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamArchitectureCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- getPfamArchitectures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamArchitectures() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamARegFullInsignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamARegFullInsignificantCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- getPfamARegFullInsignificants() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamARegFullSignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPfamARegFullSignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamARegFullSignificantCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- getPfamARegFullSignificants() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamARegFullSignificantWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getPfamARegSeed() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamARegSeedPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getPfamASignificant() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getPfamAWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- getPfamB() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getPfamBacc() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getPfamBCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- getPfamBid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getPfamBRegs() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getPfamBWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getPfamClanDatabaseLinkses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamClans() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getPfamClans() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getPfamClansCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- getPfamClanses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamClanses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getPfamClanshasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPfamClanshasPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getPfamClanshasPfamLiteratureReferencesPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getPfamClansWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getPfamClansWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- getPfamCompleteProteomes() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getPfamCompleteProteomesCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- getPfamCompleteProteomesWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- getPfamContextRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamInterpros() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- getPfamLiteratureReferences() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- getPfamLiteratureReferencesCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- getPfamLiteratureReferencesWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- getPfamLiteratureReferencesWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- getPfamNestedLocationses() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamPDB() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPfamPDBResidueDatas() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getPfamPDBWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPfamProteomeRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPfamProteomeRegions() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getPfamProteomeRegionsCount() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- getPfamProteomeRegionsPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- getPfamSeqhasProtein() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getPfamSeqhasProtein() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getPfamSeqhasProteinPK() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamSeqhasUniProtId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- getPfamseqRes() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPfamseqSeqNumber() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getPFrom() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getPharmacology() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getPLength() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getPmid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getPmid() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- getPmid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- getPmid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getPmid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getPosition() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getPosition() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getPositionEnd() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getPOSITIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getPOSITIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getPositionStart() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getPositionStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getPOSITIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getPrecursor() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPrecursor() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getPRECURSORFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getPreferredSize() - Method in class org.jbiowh.gui.component.tree.TreeSchemaRenderer
-
- getPrevious() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the previous gene to the current
- getPreviousId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPreviousId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getPreviousWID() - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Get the WidTable's previous Id
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getPrimaryRef() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getPRIMARYREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getPrintWriterFromName(String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Get the PrintWriter object fro the named file.
- getProduct() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getProduct() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the product property.
- getPROPERTYFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getPROPERTYTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getProtein() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProtein() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getProtein() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getProtein() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getProtein() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getProtein() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getProtein() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getProtein() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getProtein() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- getProtein() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- getProteinAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getProteinAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getProteinAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- getProteinAccessionNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinAccessionNumberPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- getProteinAccessionVersion() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getProteinAsCarriers() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinAsEnzyme() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinAsTransporters() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinBinding() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getProteinBioCyc() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinBioCycPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getProteinComment() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getProteinCommentConflict() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentConflictPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getProteinCommentEvent() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentEventPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- getProteinCommentInteract() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentInteractPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- getProteinCommentIsoform() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentIsoform() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- getProteinCommentIsoform() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- getProteinCommentIsoformWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- getProteinCommentIsoformWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- getProteinCommentLink() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentLinkPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- getProteinCommentSubCellularLocation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- getProteinCommentWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getProteinCount() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- getProteinDBReference() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinDBReference() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- getProteinDBReferenceProperty() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getProteinDBReferencePropertyPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- getProteinDBReferenceWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- getProteinDIP() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinDIPPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- getProteinDrugBank() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinDrugBankPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- getProteinEC() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinECPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- getPROTEINEXISTENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getProteinFeature() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinFeature() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getProteinFeatureVariation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getProteinFeatureWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getProteinFirstAccessionNumber() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPROTEINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getPROTEINFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getProteinFromId(List<String>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
- getProteinFromId(String) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
- getProteinFromTaxonomy(String) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Retrieve the proteins that belong the Taxonomy
- getProteinFromTaxonomy(List<Taxonomy>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Retrieve the proteins that belong the Taxonomy list
- getProteinFromTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Return the proteins that belong the Taxonomy
- getProteinGi() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getProteinGi() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getProteinhasProteinKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinhasProteinKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getProteinhasProteinKeywordPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getProteinInsignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getProteinIntAct() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinIntActPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- getProteinIsoformId() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinIsoformIdPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- getProteinIsoformName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getProteinIsoformNamePK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- getProteinKEGG() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinKEGGPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- getProteinKeyword() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- getProteinKeywordCount() - Method in class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- getProteinKeywordWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- getProteinLink(boolean, Object) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the Protein action
- getProteinLongName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinLongNameDirected() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinMINT() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinMINTPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- getProteinName() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinNameDef() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getProteinNameDirected() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getPROTEINNAMEGROUPFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getProteinNamePK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- getProteinOtherLocation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinPDB() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinPDBPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- getProteinPFAM() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinPFAMPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- getProteinPMID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getProteinPMIDPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- getProteinRefSeqPK() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- getProteins() - Method in class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Return the list of founded proteins
- getProteinSignificant() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getPROTEINTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- getProteinWID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- getPTo() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getPTTFile() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getRank() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getrClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getRClass() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the reaction property.
- getReaction() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the reaction property.
- getRECOMMENDEDNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getRedoAction() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the Redo Action
- getRef() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getReference() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getReference() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getREFERENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ReferenceTags
-
- getREFFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getREFFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getREFFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getRefType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getRefTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getREFTYPEACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getREFTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getRegionId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getRelation() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the relation property.
- getRelationship() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- getRELATIONSHIP() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the RELATIONSHIP Tags
- getReleaseDate() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's release date
- getReleaseDate() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getRELEASEDATEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- getRELEASEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- getReleaseValue() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getRemark() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getRemark() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getRemark() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getResidueCoverage() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getResolution() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getResource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getResource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getRESOURCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getResult() - Method in class org.jbiowh.core.utility.utils.SavedResults
-
Get the result map
- getResult(String) - Method in class org.jbiowh.core.utility.utils.SavedResults
-
Get the result object at index index
- getResultPanel() - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Get the Result Panel
- getRNANucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getrNANucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getRNANucleotideAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getRNANucleotideAccessionVersion() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getRNANucleotideGi() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getRoute() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getRouteOfElimination() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
- getRowCount() - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
- getSa() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getSchema(String) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the WHDBMSFactory from its URL
- getSchemas() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the opened schemas
- getScope() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- getSCOPE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SCOPE Tags
- getScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getscrollCount() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the number of items in the scrolling portion of the menu.
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- getSearchFactoryEntity() - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Get the main entity class
- getSearchMethod() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getSecondary() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getSECONDARYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getSECONDARYREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getSeedConsensus() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSeedSource() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSelectedElements() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Get the list with the selected elements
- getSeq() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeq() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getSeqEnd() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getSeqID() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getSeqLength() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeqModified() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeqRef() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getSeqResource() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getSeqStart() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getSeqType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getSequence() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getSequence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getSequenceBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSequenceBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSequenceBitsScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSequenceCoverage() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getSequenceEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getSequenceEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getSequenceEvalueScore() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getSEQUENCEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getSequenceGA() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSequenceNC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSequenceTC() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getSeqVersion() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getSeqVersion() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getSeqVersion() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- getSerial() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getShortLabel() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Get the shortLabel value
- getSHORTLABELFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getSHORTNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getSource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getSource() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getSOURCEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- getSourceId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getSpecies() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getSqlFormat() - Method in class org.jbiowh.gui.sqltables.CreateTable
-
- getSQLFunctionsAndOperators() - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLFunctionsAndOperators
-
Get the SQL Functions and Operators
- getSQLReservedWords() - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLReservedWords
-
Get the SQL Reserved Words
- getSQLSelection() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the SQL sentences under selection
- getSQLSpecialChars() - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLSpecialChar
-
Get the SQL special characters
- getsQLTableViewPanel() - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Get the SQL Table view panel
- getStart() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getStartFullName() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getStartPositionOnTheGenomicAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getStartShortLabel() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getSTARTSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.FeatureRangeTags
-
- getStatus() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- getStatus() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's status
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getStatus() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- getSTATUS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EvidencedStringTypeTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getSTATUSFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.LocationTags
-
- getStrand() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getStrength() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getSUBCELLULARLOCATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getSUBCELLULARLOCATIONTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getSUBMITTEDNAMEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- getSUBSET() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SUBSET Tags
- getSUBSETDEF() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOHeaderTags
-
Get the SUBSETDEF tag
- getSubstrate() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the substrate property.
- getSubstructure() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getSubtype() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the subtype property.
- getSymbol() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getSymbolFromNomenclature() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getSynonym() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getSynonym() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- getSYNONYM() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SYNONYM Tags
- getSynonym() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getSynonym() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- getSynonyms() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- getSYNONYMTEXT() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the SYNONYMTEXT Tags
- getSynthesisRef() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getSySName() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getTables() - Method in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
Return the OMIM's tables names in a list
- getTables() - Method in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.DrugBankTables
-
Return the Drugbank's tables names in a list
- getTables() - Method in class org.jbiowh.core.datasets.gene.parser.GenePTTTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.mainloader.DataSetsTables
-
Return a list object with the tables names
- getTables() - Method in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.protclust.parser.UniRefTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
Return the Map object with the tables names and TSV files names
- getTables() - Method in class org.jbiowh.core.datasets.taxonomy.parser.TaxonomyTables
-
Return the Map object with the tables names and TSV files names
- getTablesOnSchema() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- getTablesOnSchema() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the tables with its fields
- getTag() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- getTagname() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- getTagname() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- getTags() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
- getTaxId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTaxID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getTaxId() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getTaxId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getTaxId() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getTaxId() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- getTaxonomy() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- getTaxonomyCount() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.controller.TaxonomyJpaController
-
- getTaxonomyDivisionWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomyGenCodeWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomyHost() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getTaxonomyMCGenCodeWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomyPMIDPK() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- getTaxonomySynonym() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
Get the scientific name for this Taxonomy
- getTaxonomySynonym(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getTaxonomySynonymNameClassWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- getTaxonomySynonymPK() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- getTaxonomyWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- getTaxonomyWID() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- getTempdir() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the temporal directory use to parse the data source
- getTerm() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GO
-
- getTERM() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the TERM Tags
- getTerm() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getTermAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- getTERMACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getTERMFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getText() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getText() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getTextEvidence() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getTEXTFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getTextStatus() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getTi() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- getTISSUEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.BioSourceTypeTags
-
- getTitle() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getTitle() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getTitle() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getTitle() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getTitle() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Gets the value of the title property.
- getTO() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the TO Tags
- getToConsiderOntology() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- getToConsiderOntologyWID() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- getTopFixedCount() - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Returns the number of items fixed at the top of the menu or popup menu.
- getTOPOLOGYFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- getTotalAaCovered() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTotalAaLength() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTotalGenomeProteins() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getTotalSeqsCovered() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getToxicity() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.jbiowh.gui.component.tree.TreeSchemaRenderer
-
- getTreeOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getTreeOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getTreeOrder() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- getTx() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getTx() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- getTx() - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTXParser
-
Get the OMIM TX first line before any TAGS
- getTxtData(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the fields to be printed in txt format for each Dataset
- getTxtDataFromCollection(Collection) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get a list with all fields to be printed from a Dataset collection
- getType() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getType() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getType() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the data source type
- getType() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- getType() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getTYPE() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the TYPE Tags
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Gets the value of the type property.
- getType() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getType() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Property
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getType() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getType() - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- getType() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Get the column's type
- getType() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Return the index's type
- getTypeAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getTYPEACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getTypeExample() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.NamesTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneLocationTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.GeneTags
-
- getTYPEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- getTypeId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- getTypeOfGene() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getTypes() - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Return the class types for each column
- getUncertainty() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getUNCERTAINTYFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getUndoAction() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Get the Undo Action
- getUniGene() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- getUNIPROT() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getUniProtId() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- getUniProtKBProteinAccession() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Get the unique UUID for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.ConstrainPanel
-
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.HomePanel
-
Return the unique Id for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Return the unique Id for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.sql.SQLBrowsePanel
-
Return the unique Id for this object
- getUniqueKey() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Return the unique Id for this object
- getUniref() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRef
-
- getUniRefEntry() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getUniRefEntry() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getUniRefEntry() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getUniRefEntryCount() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefEntryJpaController
-
- getUniRefEntryProperty() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getUniRefEntryWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getUniRefEntryWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getUniRefMember() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getUniRefMember() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getUniRefMember() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getUniRefMemberCount() - Method in class org.jbiowh.core.datasets.protclust.jpa.controller.UniRefMemberJpaController
-
- getUniRefMemberProperty() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getUniRefMemberWID() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getUniSTSID() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- getUnit() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getUnit() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getUnitAc() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- getUNITACFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getUNITFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- getUNITFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- getUnparse() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getUpdated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getUpdated() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getUpdated() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getUpdated() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getUri() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- getURIFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.CommentTags
-
- getUrl() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getUrl() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getUrl() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getUrl() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL DB URL
- getUrl() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL DB URL
- getUrl() - Method in class org.jbiowh.gui.OpenWHDB
-
Return the URL opened
- getUser() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Return the MySQL DB user
- getUser() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return the MySQL DB user
- getValue() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getValue() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getValue() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- getValue() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Gets the value of the value property.
- getValue() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getValue() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getValue() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Property
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
- getValueAt(int, int) - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
- getVALUEFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.ConfidenceTags
-
- getVALUEFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.DBReferenceTags
-
- getValueVal() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getVariation() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getVARIATIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.FeatureTags
-
- getVersion() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getVersion() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getVersion() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getVersion() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the the DataSet's version
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getVersion() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getVersion() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getVersion() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- getVERSION() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.EntryTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.EntrySetTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.ConflictTags
-
- getVERSIONFLAGS() - Method in class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- getVertexToCellMap() - Method in class org.jbiowh.core.utility.graph.JGraphXAdapter
-
- getViterbiLambda() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getViterbiMu() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getVolumeOfDistribution() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getWhdbmsFactory() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the DBMS Factory
- getWhdbmsFactory() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Return the WHDBMS factory
- getWHEntityManager() - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the Persistence EntityManagerFactory
- getWHEntityManager(WHDBMSFactory) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return the Persistence EntityManagerFactory for a WHDBMS factory
Create the connection if the EntityManagerFactory does not exist
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- getWid() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- getWid() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- getWid() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- getWid() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- getWid() - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Get the DataSet's Id
- getWid() - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Get the WidTable's Id
- getWid() - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Return the WID value
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- getWid() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- getWid() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- getWid() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- getWID() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- getWid() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- getWid() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- getWid() - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- getWID(Object) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
Get the WID for each DataSet entity
- getWIDFromDataBase() - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Retrieve the WID entity from the database
- getWidTableCount() - Method in class org.jbiowh.core.datasets.mainloader.controller.WidTableJpaController
-
Count all WidTable entities objects
- getWidth() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getWidth() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the width property.
- getX() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getX() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the x property.
- getXREFANALOG() - Method in class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
Get the XREFANALOG Tags
- getXREFFLAGS() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.tags.XrefTags
-
- getXsdfiledef() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the Xsdfiledef parameter
- getY() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- getY() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Gets the value of the y property.
- getYear() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- GO - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class is the GO starting class for the SAX parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GO() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GO
-
- GOCommonTags - Class in org.jbiowh.core.datasets.ontology.parser.xml.tags
-
This Class storage the GO-Ontology common XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOCommonTags() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOCommonTags
-
- GOHeader - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class handled the HEADER XML Tag on the GO Ontology XML OBO file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GOHeader() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GOHeader
-
This constructor initialize the WH file manager and the WH DataSet
manager
- GOHeaderTags - Class in org.jbiowh.core.datasets.ontology.parser.xml.tags
-
This Class storage the GO-Ontology XML Header Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOHeaderTags() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOHeaderTags
-
- GOOntologyDefaultHandler - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class acts as DefaultHandler for the Ontology SaX Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOOntologyDefaultHandler(GO) - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- GOTerm - Class in org.jbiowh.core.datasets.ontology.parser.xml
-
This Class is the Go Term XML Sax parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- GOTerm() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.GOTerm
-
This constructor initialize the WH file manager and the WH DataSet
manager
- GOTermTags - Class in org.jbiowh.core.datasets.ontology.parser.xml.tags
-
This Class storage the GO-Ontology XML Term Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- GOTermTags() - Constructor for class org.jbiowh.core.datasets.ontology.parser.xml.tags.GOTermTags
-
- graph - Variable in class org.jbiowh.core.utility.graph.BioWHGraph
-
The graph object
- graphAnal() - Method in class org.jbiowh.tools.examples.DrugPathwayGraph
-
- graphics - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
- Graphics - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Graphics XML parser from JAXB for KGML file format
- Graphics() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
- GROUP - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.GroupsTags
-
- GROUPS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.GroupsTags
-
- GroupsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Groups XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- IconFetch - Class in org.jbiowh.gui.component.icons
-
This Class is hanlded the icon on the Close Tab
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- ID - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PartnerTags
-
- ID - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- ID - Variable in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- id - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Component
-
- id - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
- id - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
- id - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
- id - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
- ID - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- ID - Variable in class org.jbiowh.core.datasets.protclust.parser.xml.tags.PropertyTags
-
- ID - Variable in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- IDENTIFIER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ExternalIdentifiersTags
-
- IDENTIFIER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.IdentifiersTypeTags
-
- IDENTIFIER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
- IdentifiersTypeTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the IdentifiersType XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- IllegalOrphanException - Exception in org.jbiowh.core.utility.controller.exceptions
-
- IllegalOrphanException(List<String>) - Constructor for exception org.jbiowh.core.utility.controller.exceptions.IllegalOrphanException
-
- image - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
- increaseWid() - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Increase the WID value by one
- INDICATION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- INDICATION - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- InferredInteraction - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML InferredInteraction Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InferredInteraction() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InferredInteractionList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML InferredInteractionList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InferredInteractionList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InferredInteractionListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML InferredInteractionList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InferredInteractionListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionListTags
-
- InferredInteractionTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML InferredInteraction Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InferredInteractionTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.InferredInteractionTags
-
- INFO - Variable in class org.jbiowh.core.logger.VerbLogger
-
This is the info message information level
- INGREDIENTS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.MixturesTags
-
- INHIBITOR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- insert(Object) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.transfer.OMIMTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.transfer.PFamATransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.transfer.DrugBankTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.transfer.GenePTTTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.gene.jpa.transfer.GeneTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.ontology.jpa.transfer.OntologyTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGCompoundTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGEnzymeTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGGeneTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGGlycanTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGPathwayTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGReactionTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntryInteractionTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntrySetEntryTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntrySetTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.protclust.jpa.transfer.UniRefEntryTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.protclust.jpa.transfer.UniRefMemberTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.protein.jpa.transfer.ProteinTransfer
-
- insert(Object) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.transfer.TaxonomyTransfer
-
- insert(Object) - Method in class org.jbiowh.core.utility.jparelationship.JpaTransferBackEnd
-
Transfer the object into a JBioWH relational schema.
The object can
be a collection of entities or a entity
- insertAutoComplete(String) - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Insert into the Document the auto completed word selected in the popup
- insertDataSet() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Insert the DataSet into the database
- InsertDBToDB - Class in org.jbiowh.tools.prototypes.insert
-
This example demonstrate how extract data from one JBioWH relational schema
and insert that data into another JBioWH relational schema
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-08 14:37:19 +0100
(Thu, 08 Nov 2012) $ $LastChangedRevision: 396 $
- InsertDBToDB() - Constructor for class org.jbiowh.tools.prototypes.insert.InsertDBToDB
-
- insertOnCaretPosition(String) - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Insert the string on the caret position
- insertString(DocumentFilter.FilterBypass, int, String, AttributeSet) - Method in class org.jbiowh.gui.component.panel.sql.syntax.SQLDocumentFilter
-
- Interactant - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Interactant tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Interactant() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InteractantTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Interactant tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- InteractantTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.InteractantTags
-
- Interaction - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Interaction Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Interaction() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InteractionList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class hanlded the XML InteractionList tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InteractionList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InteractionListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML InteractionList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InteractionListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionListTags
-
- InteractionTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Interaction Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InteractionTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractionTags
-
- Interactor - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Interactor Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Interactor() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InteractorList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML InteractorList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InteractorList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- InteractorListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML InteractorList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InteractorListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorListTags
-
- InteractorTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Interactor Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- InteractorTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.InteractorTags
-
- isAI() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
True if column is AI
- isAV(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isBooleanOperation(String) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
True is the operation is a boolean operation or not
- isCancel() - Method in class org.jbiowh.gui.sqltables.CreateTable
-
- isCanceled() - Method in class org.jbiowh.gui.OpenWHDB
-
Return true if the operation was canceled by the user
- isCancelled() - Method in class org.jbiowh.gui.component.file.FileChooser
-
Get the JFileChooser status
- isCAS(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is CAS type
- isCD(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isCellEditable(int, int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
- isCN(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isConnOpen() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- isConnOpen() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
True if the connection is open, false other wise.
- isCS(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isDataSetInserted() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Check if the DataSet is inserted
- isDigits(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string has only digits
- isDroptables() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return the drop tables parameter
- isDrugBankId(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is DrugBank Id type
- isEC(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is EC type
- isED(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isEmpty() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Returns true if this list contains no elements.
- isEmpty() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Is true if there is not columns in the table
- isEmpty() - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Is true if there is not indexes in the table
- isField(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isFill() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- isGOId(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is GO Id type
- isGraphConnected() - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
Return true if the graph is connected
- isId(Object, String) - Method in class org.jbiowh.gui.datasets.EntityParserFieldProxy
-
True if the field belongs to some DataSet entity
- isIsObsolete() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- isJbiowhSchema() - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- isJbiowhSchema() - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Return true is this connection belongs to a JBioWH default schema
- isKEGGCompoundEntry(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is KEGG Compound Entry type
- isKEGGGlycanEntry(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is KEGG Glycan Entry type
- isKEGGPathwayEntry(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is KEGG Pathway Entry type
- isKEGGPathwayNumber(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is KEGG Pathway Number type
- isLong(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is Long type
- isMain() - Method in class org.jbiowh.gui.OpenWHDB
-
Returns if the opened DB is selected as MainDB
- isNN() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
True if column is NN
- isNO(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- Isoform - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Isoform Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Isoform() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
This constructor initialize the WH file manager and the WH DataSet
manager
- IsoformTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Isoform Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- IsoformTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.IsoformTags
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
- isOpen() - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Get the open value
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
- isOpen() - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
- isOpen() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
- isOpen() - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Location
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Reference
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- isOpen() - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
- isPK() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
True if column is PK
- isProteinName(String) - Method in class org.jbiowh.core.utility.utils.BioWHPattern
-
Returns true if this string is Protein Name type
- isRecord(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isRF(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isRunlinks() - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Return true if the parser have to run the DataSet's links
- isSA(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isTI(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isTX(String) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- isUQ() - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
True if column is UQ
- isWHDBMSFactoryOpen(WHDBMSFactory) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Return true is the WHDBMSFactory is open
- keepVisible(JMenuItem) - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Scrolls the specified item into view each time the menu is opened.
- keepVisible(int) - Method in class org.jbiowh.gui.component.popup.MenuScroller
-
Scrolls the item at the specified index into view each time the menu is
opened.
- KEGGCompound - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound
-
This class is the KEGG Compound entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGCompound() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- KEGGCompound(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- KEGGCompound(Long, String, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- KEGGCOMPOUND - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCompound - Class in org.jbiowh.core.datasets.pathway.kegg.parser.ligand
-
This class is KEGG Compound parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGCompound() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGCompound
-
- KEGGCOMPOUND_HAS_DRUGBANK - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCOMPOUND_HAS_KEGGPATHWAY - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCompoundDataSetView - Class in org.jbiowh.gui.datasets.pathway.compound
-
This Class handled the KEGGCompound View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGCompoundDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundDataSetView
-
Creates new form AbstractDataSetView
- KEGGCompoundDBLink - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound
-
This class is the KEGG Compound DBLink entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGCompoundDBLink() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- KEGGCompoundDBLink(KEGGCompoundDBLinkPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- KEGGCompoundDBLink(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- KEGGCOMPOUNDDBLINK - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- keggcompounddblinkPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- KEGGCompoundDBLinkPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound
-
This class is the KEGG Compound DBLink PK entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGCompoundDBLinkPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- KEGGCompoundDBLinkPK(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- KEGGCompoundDrugBankLink - Class in org.jbiowh.core.datasets.pathway.kegg.parser.links
-
This Class is the KEGGCompound DrugBank link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGCOMPOUNDENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCompoundJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGG Compound Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGCompoundJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGCompoundJpaController
-
- KEGGCompoundListView - Class in org.jbiowh.gui.datasets.pathway.compound
-
This Class show the KEGG Compound List view
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGCompoundListView(Collection<KEGGCompound>, JComponent) - Constructor for class org.jbiowh.gui.datasets.pathway.compound.KEGGCompoundListView
-
Create the KEGGCompound List object
- KEGGCompoundName - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound
-
This class is the KEGG Compound Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGCompoundName() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- KEGGCompoundName(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- KEGGCompoundName(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- KEGGCOMPOUNDNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCOMPOUNDPATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCOMPOUNDREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGCompoundTransfer - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
This class handled the KEGGCompound transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- KEGGCompoundTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGCompoundTransfer
-
Create the KEGGCompound transfer
- KEGGCompoundTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGCompoundTransfer
-
Create the KEGGCompound transfer
- KEGGEnzyme - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This class is the KEGG Enzyme entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 322 $
- KEGGEnzyme() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- KEGGEnzyme(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- KEGGEnzyme(Long, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- KEGGENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzyme - Class in org.jbiowh.core.datasets.pathway.kegg.parser.ligand
-
This class is the KEGG Enzyme parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGEnzyme() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGEnzyme
-
- KEGGENZYME_HAS_KEGGCOMPOUND_AS_COFACTOR - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYME_HAS_KEGGCOMPOUND_AS_EFFECTOR - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYME_HAS_KEGGCOMPOUND_AS_INHIBITOR - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYME_HAS_KEGGENZYMECLASS - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYME_HAS_KEGGPATHWAY - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMEALLREAC - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzymeClass - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This class is the KEGGEnzymeClass entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeClass() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- KEGGEnzymeClass(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- KEGGENZYMECLASS - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMECLASSTEMP - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMECOFACTOR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzymeDataSetView - Class in org.jbiowh.gui.datasets.pathway.enzyme
-
This Class handled the KEGGEnzyme View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeDataSetView
-
Creates new form AbstractDataSetView
- KEGGEnzymeDBLink - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This class is the KEGG Enzyme DBLink entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeDBLink() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- KEGGEnzymeDBLink(KEGGEnzymeDBLinkPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- KEGGEnzymeDBLink(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- KEGGENZYMEDBLINK - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- kEGGEnzymeDBLinkPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- KEGGEnzymeDBLinkPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This class is the KEGG Enzyme DBLink PK entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeDBLinkPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- KEGGEnzymeDBLinkPK(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- KEGGENZYMEEFFECTOR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMEGENES - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMEINHIBITOR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzymeJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGG Enzyme Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGEnzymeJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGEnzymeJpaController
-
- KEGGEnzymeListView - Class in org.jbiowh.gui.datasets.pathway.enzyme
-
This Class show the KEGG Enzyme List view
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeListView(Collection<KEGGEnzyme>, JComponent) - Constructor for class org.jbiowh.gui.datasets.pathway.enzyme.KEGGEnzymeListView
-
Create the KEGGEnzyme List object
- KEGGEnzymeName - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This class is the KEGG Enzyme Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeName() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- KEGGEnzymeName(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- KEGGEnzymeName(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- KEGGENZYMENAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzymeOrthology - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This Class is the KEGG Enzyme Orthology entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeOrthology() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- KEGGEnzymeOrthology(KEGGEnzymeOrthologyPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- KEGGEnzymeOrthology(long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- KEGGENZYMEORTHOLOGY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- kEGGEnzymeOrthologyPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- KEGGEnzymeOrthologyPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeOrthologyPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- KEGGEnzymeOrthologyPK(long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- KEGGENZYMEPATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMEPRODUCT - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMEREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGENZYMESUBSTRATE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzymeSysName - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
This class is the KEGG Enzyme SysName entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGEnzymeSysName() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- KEGGEnzymeSysName(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- KEGGEnzymeSysName(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- KEGGENZYMESYSNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGEnzymeTransfer - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
This class handled the KEGGEnzyme transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- KEGGEnzymeTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGEnzymeTransfer
-
Create the KEGGEnzyme transfer
- KEGGEnzymeTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGEnzymeTransfer
-
Create the KEGGEnzyme transfer
- KEGGGene - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This class is THE KEGG Gene entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGGene() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- KEGGGene(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- KEGGGene(Long, String, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- KEGGGene - Class in org.jbiowh.core.datasets.pathway.kegg.parser.gene
-
This class is the KEGG Gene parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGGene() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.gene.KEGGGene
-
- KEGGGENE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGENE_HAS_KEGGPATHWAY - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGeneDataSetView - Class in org.jbiowh.gui.datasets.pathway.gene
-
This Class handled the KEGGGene View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneDataSetView
-
Creates new form AbstractDataSetView
- KEGGGeneDBLink - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This class is the KEGG Gene DBLink entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneDBLink() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- KEGGGeneDBLink(KEGGGeneDBLinkPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- KEGGGeneDBLink(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- KEGGGENEDBLINK - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- kegggenedblinkPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- KEGGGeneDBLinkPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This class is the KEGG Gene DBLink PK entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneDBLinkPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- KEGGGeneDBLinkPK(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- KEGGGeneDisease - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This class is the KEGGGeneDisease entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneDisease() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- KEGGGeneDisease(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- KEGGGeneDisease(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- KEGGGENEDISEASE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGeneDrugTarget - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This Class is THE KEGG Gene DrugTarget entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneDrugTarget() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- KEGGGeneDrugTarget(KEGGGeneDrugTargetPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- KEGGGeneDrugTarget(long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- KEGGGENEDRUGTARGET - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- kEGGGeneDrugTargetPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- KEGGGeneDrugTargetPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneDrugTargetPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- KEGGGeneDrugTargetPK(long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- KEGGGeneJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGGGene Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGGeneJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGeneJpaController
-
- KEGGGeneListView - Class in org.jbiowh.gui.datasets.pathway.gene
-
This Class shows the KEGG Gene List view
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneListView(Collection<KEGGGene>, JComponent) - Constructor for class org.jbiowh.gui.datasets.pathway.gene.KEGGGeneListView
-
Create the KEGGGeneList List object
- KEGGGeneName - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This class is the KEGG Gene Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneName() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- KEGGGeneName(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- KEGGGeneName(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- KEGGGENENAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGeneOrthology - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This Class is THE KEGG Gene Orthology entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneOrthology() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- KEGGGeneOrthology(KEGGGeneOrthologyPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- KEGGGeneOrthology(long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- KEGGGENEORTHOLOGY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- kEGGGeneOrthologyPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- KEGGGeneOrthologyPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGeneOrthologyPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- KEGGGeneOrthologyPK(long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- KEGGGENEPATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGeneTransfer - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
This class handled the KEGGGene transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGGeneTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGGeneTransfer
-
Create the KEGGGene transfer
- KEGGGeneTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGGeneTransfer
-
Create the KEGGGene transfer
- KEGGGlycan - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan
-
This class is the KEGG Glycan entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGGlycan() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- KEGGGlycan(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- KEGGGlycan(Long, String, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- KEGGGLYCAN - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGlycan - Class in org.jbiowh.core.datasets.pathway.kegg.parser.ligand
-
This class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGGlycan() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGGlycan
-
- KEGGGLYCAN_HAS_KEGGGLYCANCLASS - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGlycanClass - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan
-
This class is KEGG Glycan Class entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGlycanClass() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- KEGGGlycanClass(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- KEGGGLYCANCLASS - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGLYCANCLASSTEMP - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGlycanDataSetView - Class in org.jbiowh.gui.datasets.pathway.glycan
-
This Class handled the KEGGGlycan View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGlycanDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanDataSetView
-
- KEGGGlycanDBLink - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan
-
This class is the KEGG Glycan DBLink entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGlycanDBLink() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- KEGGGlycanDBLink(KEGGGlycanDBLinkPK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- KEGGGlycanDBLink(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- KEGGGLYCANDBLINK - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- keggglycandblinkPK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- KEGGGlycanDBLinkPK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan
-
This class is KEGG Glycan DBLink PK entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGlycanDBLinkPK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- KEGGGlycanDBLinkPK(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- KEGGGLYCANENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGlycanJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGGGlycan Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGGlycanJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGGlycanJpaController
-
- KEGGGlycanListView - Class in org.jbiowh.gui.datasets.pathway.glycan
-
This Class show the KEGG Glycan List view
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGlycanListView(Collection<KEGGGlycan>, JComponent) - Constructor for class org.jbiowh.gui.datasets.pathway.glycan.KEGGGlycanListView
-
Create the KEGGGlycan List object
- KEGGGlycanName - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan
-
This class is the KEGGGlycanName entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGGlycanName() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- KEGGGlycanName(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- KEGGGlycanName(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- KEGGGLYCANNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGLYCANORTHOLOGY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGLYCANPATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGLYCANREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGGlycanTransfer - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
This class handled the KEGGGlycan transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- KEGGGlycanTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGGlycanTransfer
-
Create the KEGGGlycan transfer
- KEGGGlycanTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGGlycanTransfer
-
Create the KEGGGlycan transfer
- KEGGLinks - Class in org.jbiowh.core.datasets.pathway.kegg.parser.links
-
This class create all KEGG external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGParser - Class in org.jbiowh.core.datasets.pathway.kegg.parser
-
This class is the KEGG Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGParser() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGParser
-
- KEGGParserEntry - Class in org.jbiowh.core.datasets.pathway.kegg.parser.utility
-
This class is storage the KEGG ENTRY data
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGParserEntry() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
- KEGGParserFactory - Interface in org.jbiowh.core.datasets.pathway.kegg.parser.utility
-
This interface is the KEGG Parser Factory
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGParserFieldTags - Class in org.jbiowh.core.datasets.pathway.kegg.parser.utility
-
This class is the KEGG Flat file field definition
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGParserFieldTags() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- KEGGParserFile - Class in org.jbiowh.core.datasets.pathway.kegg.parser.utility
-
This class is the KEGG Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGParserFile(String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFile
-
Create the KEGGParserFile object from the file name
- KEGGParserFile(String, File) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFile
-
Create the KEGGParserFile object from the file object
- KEGGPathway - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGPathway() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- KEGGPathway(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- KEGGPathway(Long, String, String, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- KEGGPATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAY_HAS_GENEINFO - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAY_HAS_PROTEN - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAY_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPathwayDataSetView - Class in org.jbiowh.gui.datasets.pathway
-
This Class handled the KEGGPathway View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.pathway.KEGGPathwayDataSetView
-
Creates new form AbstractDataSetView
- KEGGPathwayEntry - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway Entry entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayEntry() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- KEGGPathwayEntry(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- KEGGPathwayEntry(Long, long, int, String, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- KEGGPATHWAYENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYENTRYCOMPOUND - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYENTRYENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYENTRYGENE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPathwayEntryGraphic - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway Entry Graphic entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayEntryGraphic() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- KEGGPathwayEntryGraphic(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- KEGGPathwayEntryGraphic(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- KEGGPATHWAYENTRYGRAPHIC - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYENTRYORTHOLOGY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYENTRYREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPathwayGeneInfoLink - Class in org.jbiowh.core.datasets.pathway.kegg.parser.links
-
This Class create the KEGGPathway_has_GeneInfo relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGPathwayJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGGPathway Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGPathwayJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGPathwayJpaController
-
- KEGGPathwayListView - Class in org.jbiowh.gui.datasets.pathway
-
This Class shows the KEGGPathway List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayListView(Collection<KEGGPathway>, JComponent) - Constructor for class org.jbiowh.gui.datasets.pathway.KEGGPathwayListView
-
Create the KEGGPathway List object
- KEGGPathwayProteinLink - Class in org.jbiowh.core.datasets.pathway.kegg.parser.links
-
This Class create the KEGGPathway_has_Protein relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGPathwayReaction - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway Reaction entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayReaction() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- KEGGPathwayReaction(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- KEGGPathwayReaction(Long, long, int, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- KEGGPATHWAYREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYREACTIONPRODUCT - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPATHWAYREACTIONSUBSTRATE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPathwayRelation - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway Relation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayRelation() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- KEGGPathwayRelation(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- KEGGPathwayRelation(Long, long, int, int) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- KEGGPATHWAYRELATION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGPathwayRelationSubType - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway Relation SubType entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayRelationSubType() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- KEGGPathwayRelationSubType(KEGGPathwayRelationSubTypePK) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- KEGGPathwayRelationSubType(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- KEGGPATHWAYRELATIONSUBTYPE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- keggpathwayrelationsubtypePK - Variable in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- KEGGPathwayRelationSubTypePK - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
This class is the KEGG Pathway Relation SubType PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGPathwayRelationSubTypePK() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- KEGGPathwayRelationSubTypePK(long, String, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- KEGGPathwayTaxonomyLink - Class in org.jbiowh.core.datasets.pathway.kegg.parser.links
-
This class is the KEGGPathway Taxonomy link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGPathwayTransfer - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
This class handled the KEGGPathway transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- KEGGPathwayTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGPathwayTransfer
-
Create the KEGGPathway transfer
- KEGGPathwayTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGPathwayTransfer
-
Create the KEGGPathway transfer
- KEGGReaction - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction
-
This class is the KEGGReaction entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGReaction() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- KEGGReaction(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- KEGGReaction(Long, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- KEGGREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGReaction - Class in org.jbiowh.core.datasets.pathway.kegg.parser.ligand
-
This class is KEGG Reaction parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGReaction() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGReaction
-
- KEGGREACTION_HAS_KEGGCOMPOUND_AS_PRODUCT - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTION_HAS_KEGGCOMPOUND_AS_SUBSTRATE - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTION_HAS_KEGGENZYME - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTION_HAS_KEGGGLYCAN_AS_PRODUCT - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTION_HAS_KEGGGLYCAN_AS_SUBSTRATE - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTION_HAS_KEGGPATHWAY - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGReactionDataSetView - Class in org.jbiowh.gui.datasets.pathway.reaction
-
This Class handled the KEGGReaction View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGReactionDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionDataSetView
-
Creates new form AbstractDataSetView
- KEGGREACTIONENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGReactionJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGG Reaction Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGReactionJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGReactionJpaController
-
- KEGGReactionListView - Class in org.jbiowh.gui.datasets.pathway.reaction
-
This Class shows the KEGG Reaction List view
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGReactionListView(Collection<KEGGReaction>, JComponent) - Constructor for class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
Create the KEGGReaction List object
- KEGGReactionName - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction
-
This class is the KEGG Reaction Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KEGGReactionName() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- KEGGReactionName(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- KEGGReactionName(Long, long, String) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- KEGGREACTIONNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTIONORTHOLOGY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTIONPATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTIONPRODUCT - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTIONRPAIR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGREACTIONSUBSTRATE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGReactionTransfer - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
This class handled the KEGGReaction transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- KEGGReactionTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGReactionTransfer
-
Create the KEGGReaction transfer
- KEGGReactionTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.transfer.KEGGReactionTransfer
-
Create the KEGGReaction transfer
- KEGGRPair - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound
-
This class is the KEGGRPair entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGRPair() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- KEGGRPair(Long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- KEGGRPair(Long, String, String, String, String, long) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- KEGGRPAIR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGRPair - Class in org.jbiowh.core.datasets.pathway.kegg.parser.ligand
-
This class is is KEGG Rpair parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- KEGGRPair() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGRPair
-
- KEGGRPAIR_HAS_KEGGCOMPOUND - Static variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGRPAIRCOMPOUND - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGRPAIRENZYME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGRPairJpaController - Class in org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
This class is the KEGG RPair Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- KEGGRPairJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.pathway.kegg.jpa.controller.KEGGRPairJpaController
-
- KEGGRPAIRREACTION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGRPAIRRELATEDPAIR - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGRPAIRRELATEDPAIRTEMP - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.KEGGTables
-
- KEGGTables - Class in org.jbiowh.core.datasets.pathway.kegg.parser
-
This class is the KEGG tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Keyword - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Keyword tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Keyword() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
This constructor initialize the WH file manager and the WH DataSet
manager
- KeywordTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Keyword Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- KeywordTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.KeywordTags
-
- KIND - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
- KINGDOM - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TaxonomyTags
-
- KNOWNACTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TargetBondTypeTags
-
- main(String[]) - Static method in class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
This is the Main to parse and insert the DataSet
- main(String[]) - Static method in class org.jbiowh.core.utility.graph.NewMain
-
- main(String[]) - Static method in class org.jbiowh.gui.JBioWH
-
- main(String[]) - Static method in class org.jbiowh.tools.dataset.DataSetReport
-
- main(String[]) - Static method in class org.jbiowh.tools.examples.AntibioticGeneNeighbors
-
Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.AntibioticGeneNeighborTax
-
Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.DrugPathwayGraph
-
This is the Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.DrugPathwayGraphFrame
-
- main(String[]) - Static method in class org.jbiowh.tools.examples.FindALLHumProt
-
This is the Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.FindALLHumProtinGO
-
This is the Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.FindALLHumProtinGOwithConst
-
This is the Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.FindGenefromDrug
-
This is the Main method
- main(String[]) - Static method in class org.jbiowh.tools.examples.FrecPathGeneNeighbors
-
The main method
- main(String[]) - Static method in class org.jbiowh.tools.gene.FindGenefromProteinGi
-
Find genes in the JBioWH relational schema from the command line
- main(String[]) - Static method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- main(String[]) - Static method in class org.jbiowh.tools.protein.FindProtein
-
- main(String[]) - Static method in class org.jbiowh.tools.protein.FindProteinFromTaxonomy
-
- main(String[]) - Static method in class org.jbiowh.tools.prototypes.insert.InsertDBToDB
-
Connect to the main database on hydra.icgeb.trieste.it
Connect to a local database named biowh and transfer the results from the
main database to the local database
- main(String[]) - Static method in class org.jbiowh.tools.prototypes.temp.Test
-
- main(String[]) - Static method in class org.jbiowh.tools.prototypes.temp.TestFrame
-
- main(String[]) - Static method in class org.jbiowh.tools.taxonomy.FindTaxonomyGraph
-
- MANUFACTURER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ManufacturersTags
-
- MANUFACTURERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ManufacturersTags
-
- ManufacturersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Manufacturers XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- MASS - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- MECHANISMOFACTION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- MEMBER - Variable in class org.jbiowh.core.datasets.protclust.parser.xml.tags.EntryTags
-
- MemberType - Class in org.jbiowh.core.datasets.protclust.parser.xml
-
This Class is the MemberType XML parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MemberType(String) - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
This constructor initialize the WH file manager and the WH DataSet
manager
- MemberTypeTags - Class in org.jbiowh.core.datasets.protclust.parser.xml.tags
-
This Class is the RepresentativeMember XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MemberTypeTags() - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.tags.MemberTypeTags
-
- MenuScroller - Class in org.jbiowh.gui.component.popup
-
A class that provides scrolling capabilities to a long menu dropdown or popup
menu.
- MenuScroller(JMenu) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a menu with the default number of
items to display at a time, and default scrolling interval.
- MenuScroller(JPopupMenu) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a popup menu with the default
number of items to display at a time, and default scrolling interval.
- MenuScroller(JMenu, int) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a menu with the specified number
of items to display at a time, and default scrolling interval.
- MenuScroller(JPopupMenu, int) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a popup menu with the specified
number of items to display at a time, and default scrolling interval.
- MenuScroller(JMenu, int, int) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a menu with the specified number
of items to display at a time, and specified scrolling interval.
- MenuScroller(JPopupMenu, int, int) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a popup menu with the specified
number of items to display at a time, and specified scrolling interval.
- MenuScroller(JMenu, int, int, int, int) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a menu with the specified number
of items to display in the scrolling region, the specified scrolling
interval, and the specified numbers of items fixed at the top and bottom
of the menu.
- MenuScroller(JPopupMenu, int, int, int, int) - Constructor for class org.jbiowh.gui.component.popup.MenuScroller
-
Constructs a
MenuScroller that scrolls a popup menu with the specified
number of items to display in the scrolling region, the specified
scrolling interval, and the specified numbers of items fixed at the top
and bottom of the popup menu.
- MIF25 - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class is the XML start point for MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIF25() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.MIF25
-
- MIF25DefaultHandler - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class is the default handler for MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIF25DefaultHandler(MIF25) - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.MIF25DefaultHandler
-
- MIF25Links - Class in org.jbiowh.core.datasets.ppi.parser.links
-
This Class create all MIF25 external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIF25Parser - Class in org.jbiowh.core.datasets.ppi.parser
-
This Class is the MIF25 parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIF25Parser() - Constructor for class org.jbiowh.core.datasets.ppi.parser.MIF25Parser
-
- MIF25ProteinLink - Class in org.jbiowh.core.datasets.ppi.parser.links
-
This Class create the MIFInteraction_has_Protein relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIF25Tables - Class in org.jbiowh.core.datasets.ppi.parser
-
This Class is the MIF25 Tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFBioSourceTypeCellType - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFBioSourceTypeCellType entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFBioSourceTypeCellType() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- MIFBioSourceTypeCellType(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- MIFBioSourceTypeCellType(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- MIFBIOSOURCETYPECELLTYPE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFBioSourceTypeCompartment - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFBioSourceTypeCompartment entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFBioSourceTypeCompartment() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- MIFBioSourceTypeCompartment(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- MIFBioSourceTypeCompartment(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- MIFBIOSOURCETYPECOMPARTMENT - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFBioSourceTypeTissue - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFBioSourceTypeTissue entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFBioSourceTypeTissue() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- MIFBioSourceTypeTissue(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- MIFBioSourceTypeTissue(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- MIFBIOSOURCETYPETISSUE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntryExperiment - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFEntryExperiment entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntryExperiment() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- MIFEntryExperiment(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- MIFEntryExperiment(Long, long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- MIFENTRYEXPERIMENT - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntryExperimentJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFEntryExperiment Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFEntryExperimentJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryExperimentJpaController
-
- MIFEntryInteraction - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFEntryInteraction entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 322 $
- MIFEntryInteraction() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- MIFEntryInteraction(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- MIFEntryInteraction(Long, long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- MIFENTRYINTERACTION - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntryInteractionJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFEntryInteraction Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFEntryInteractionJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractionJpaController
-
- MIFEntryInteractionTransfer - Class in org.jbiowh.core.datasets.ppi.jpa.transfer
-
This class handled the MIFEntryInteraction transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntryInteractionTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntryInteractionTransfer
-
Create the MIFEntryInteraction transfer
- MIFEntryInteractionTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntryInteractionTransfer
-
Create the MIFEntryInteraction transfer
- MIFEntryInteractor - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFEntryInteractor entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntryInteractor() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- MIFEntryInteractor(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- MIFEntryInteractor(Long, long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- MIFENTRYINTERACTOR - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntryInteractorJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFEntryInteractor Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFEntryInteractorJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntryInteractorJpaController
-
- MIFEntrySet - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFEntrySet entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntrySet() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- MIFEntrySet(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- MIFEntrySet(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- MIFENTRYSET - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntrySetEntry - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFEntrySetEntry entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 322 $
- MIFEntrySetEntry() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- MIFEntrySetEntry(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- MIFEntrySetEntry(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- MIFENTRYSETENTRY - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntrySetEntryJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFEntrySetEntry Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFEntrySetEntryJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetEntryJpaController
-
- MIFEntrySetEntryTransfer - Class in org.jbiowh.core.datasets.ppi.jpa.transfer
-
This class handled the MIFEntrySetEntry transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntrySetEntryTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntrySetEntryTransfer
-
Create the MIFEntrySetEntry transfer
- MIFEntrySetEntryTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntrySetEntryTransfer
-
Create the MIFEntrySetEntry transfer
- MIFEntrySetJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFEntrySet Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntrySetJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySetJpaController
-
- MIFEntrySetTransfer - Class in org.jbiowh.core.datasets.ppi.jpa.transfer
-
This class handled the MIFEntrySet transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntrySetTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntrySetTransfer
-
Create the MIFEntrySet transfer
- MIFEntrySetTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.transfer.MIFEntrySetTransfer
-
Create the MIFEntrySet transfer
- MIFEntrySource - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFEntrySource entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFEntrySource() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- MIFEntrySource(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- MIFEntrySource(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- MIFENTRYSOURCE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFEntrySourceJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFEntrySource Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFEntrySourceJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFEntrySourceJpaController
-
- MIFExperimentFeatDetecMethod - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFExperimentFeatDetecMethod entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFExperimentFeatDetecMethod() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- MIFExperimentFeatDetecMethod(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- MIFExperimentFeatDetecMethod(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- MIFEXPERIMENTFEATDETECMETHOD - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFExperimentInterDetecMethod - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFExperimentInterDetecMethod entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFExperimentInterDetecMethod() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- MIFExperimentInterDetecMethod(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- MIFExperimentInterDetecMethod(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- MIFEXPERIMENTINTERDETECMETHOD - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFExperimentPartIdentMethod - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFExperimentPartIdentMethod entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFExperimentPartIdentMethod() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- MIFExperimentPartIdentMethod(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- MIFExperimentPartIdentMethod(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- MIFEXPERIMENTPARTIDENTMETHOD - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFFeatureFeatDetMeth - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFFeatureFeatDetMeth entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFFeatureFeatDetMeth() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- MIFFeatureFeatDetMeth(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- MIFFeatureFeatDetMeth(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- MIFFEATUREFEATDETMETH - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFFeatureFeatureRange - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFFeatureFeatureRange entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFFeatureFeatureRange() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- MIFFeatureFeatureRange(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- MIFFeatureFeatureRange(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- MIFFEATUREFEATURERANGE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFFeatureFeatureType - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFFeatureFeatureType entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFFeatureFeatureType() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- MIFFeatureFeatureType(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- MIFFeatureFeatureType(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- MIFFEATUREFEATURETYPE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFInferredInteractionParticipant - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFInferredInteractionParticipant entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFInferredInteractionParticipant() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- MIFInferredInteractionParticipant(MIFInferredInteractionParticipantPK) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- MIFInferredInteractionParticipant(long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- MIFINFERREDINTERACTIONPARTICIPANT - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- mIFInferredInteractionParticipantPK - Variable in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- MIFInferredInteractionParticipantPK - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFInferredInteractionParticipantPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFInferredInteractionParticipantPK() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- MIFInferredInteractionParticipantPK(long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- MIFINTERACTION_HAS_PROTEIN - Static variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFINTERACTION_HAS_PROTEIN_TEMP - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFINTERACTIONCOUNT - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFInteractionInferredInteraction - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFInteractionInferredInteraction entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFInteractionInferredInteraction() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- MIFInteractionInferredInteraction(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- MIFInteractionInferredInteraction(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- MIFINTERACTIONINFERREDINTERACTION - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFInteractionInteractionType - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFInteractionInteractionType entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFInteractionInteractionType() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- MIFInteractionInteractionType(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- MIFInteractionInteractionType(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- MIFINTERACTIONINTERACTIONTYPE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFInteractionParticipant - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFInteractionParticipant entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFInteractionParticipant() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- MIFInteractionParticipant(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- MIFInteractionParticipant(Long, long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- MIFINTERACTIONPARTICIPANT - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFInteractionParticipantJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFInteractionParticipant Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFInteractionParticipantJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFInteractionParticipantJpaController
-
- MIFInteractorInteractorType - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFInteractorInteractorType entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFInteractorInteractorType() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- MIFInteractorInteractorType(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- MIFInteractorInteractorType(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- MIFINTERACTORINTERACTORTYPE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherAlias - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherAlias entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherAlias() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- MIFOtherAlias(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- MIFOtherAlias(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- MIFOTHERALIAS - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherAttribute - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherAttribute entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 322 $
- MIFOtherAttribute() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- MIFOtherAttribute(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- MIFOtherAttribute(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- MIFOTHERATTRIBUTE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherAvailability - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherAvailability entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherAvailability() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- MIFOtherAvailability(MIFOtherAvailabilityPK) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- MIFOtherAvailability(MIFOtherAvailabilityPK, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- MIFOtherAvailability(long, String) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- MIFOTHERAVAILABILITY - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- mIFOtherAvailabilityPK - Variable in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- MIFOtherAvailabilityPK - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherAvailabilityPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherAvailabilityPK() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- MIFOtherAvailabilityPK(long, String) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- MIFOtherBibRef - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherBibRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherBibRef() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- MIFOtherBibRef(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- MIFOtherBibRef(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- MIFOTHERBIBREF - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherBioSourceType - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherBioSourceType entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherBioSourceType() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- MIFOtherBioSourceType(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- MIFOtherBioSourceType(Long, long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- MIFOTHERBIOSOURCETYPE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherBioSourceTypeJpaController - Class in org.jbiowh.core.datasets.ppi.jpa.controller
-
This class is the MIFOtherBioSourceTypeJpaController
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MIFOtherBioSourceTypeJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.controller.MIFOtherBioSourceTypeJpaController
-
- MIFOtherConfidence - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherConfidence entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherConfidence() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- MIFOtherConfidence(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- MIFOtherConfidence(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- MIFOTHERCONFIDENCE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherExperimentRef - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherExperimentRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherExperimentRef() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- MIFOtherExperimentRef(MIFOtherExperimentRefPK) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- MIFOtherExperimentRef(MIFOtherExperimentRefPK, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- MIFOtherExperimentRef(long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- MIFOTHEREXPERIMENTREF - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- mIFOtherExperimentRefPK - Variable in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- MIFOtherExperimentRefPK - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherExperimentRefPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherExperimentRefPK() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- MIFOtherExperimentRefPK(long, int) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- MIFOtherXRef - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherXRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherXRef() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- MIFOtherXRef(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- MIFOtherXRef(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- MIFOTHERXREF - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherXRefGO - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherXRefGO entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherXRefGO() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- MIFOtherXRefGO(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- MIFOtherXRefGO(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- MIFOTHERXREFGO - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherXRefPubMed - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherXRefPubMed entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherXRefPubMed() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- MIFOtherXRefPubMed(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- MIFOtherXRefPubMed(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- MIFOTHERXREFPUBMED - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherXRefRefSeq - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherXRefRefSeq entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherXRefRefSeq() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- MIFOtherXRefRefSeq(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- MIFOtherXRefRefSeq(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- MIFOTHERXREFREFSEQ - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFOtherXRefUniprot - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFOtherXRefUniprot entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFOtherXRefUniprot() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- MIFOtherXRefUniprot(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- MIFOtherXRefUniprot(Long, long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- MIFOTHERXREFUNIPROT - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFParticipantBiologicalRole - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantBiologicalRole entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantBiologicalRole() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- MIFParticipantBiologicalRole(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- MIFParticipantBiologicalRole(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- MIFPARTICIPANTBIOLOGICALROLE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFParticipantExperimentalInteractor - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantExperimentalInteractor entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantExperimentalInteractor() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- MIFParticipantExperimentalInteractor(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- MIFParticipantExperimentalInteractor(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- MIFPARTICIPANTEXPERIMENTALINTERACTOR - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFParticipantExperimentalPreparation - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantExperimentalPreparation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantExperimentalPreparation() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- MIFParticipantExperimentalPreparation(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- MIFParticipantExperimentalPreparation(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- MIFPARTICIPANTEXPERIMENTALPREPARATION - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFParticipantExperimentalRole - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantExperimentalRole entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantExperimentalRole() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- MIFParticipantExperimentalRole(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- MIFParticipantExperimentalRole(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- MIFPARTICIPANTEXPERIMENTALROLE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFParticipantFeature - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantFeature entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantFeature() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- MIFParticipantFeature(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- MIFParticipantFeature(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- MIFPARTICIPANTFEATURE - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIFParticipantParameter - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantParameter entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantParameter() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- MIFParticipantParameter(MIFParticipantParameterPK) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- MIFParticipantParameter(long, String) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- MIFPARTICIPANTPARAMETER - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- mIFParticipantParameterPK - Variable in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- MIFParticipantParameterPK - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantParameterPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantParameterPK() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- MIFParticipantParameterPK(long, String) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- MIFParticipantPartIdentMeth - Class in org.jbiowh.core.datasets.ppi.jpa.entities
-
This Class is the MIFParticipantPartIdentMeth entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MIFParticipantPartIdentMeth() - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- MIFParticipantPartIdentMeth(Long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- MIFParticipantPartIdentMeth(Long, long) - Constructor for class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- MIFPARTICIPANTPARTIDENTMETH - Variable in class org.jbiowh.core.datasets.ppi.parser.MIF25Tables
-
- MIM2GENE - Variable in class org.jbiowh.core.datasets.gene.parser.GeneTables
-
- mimicObjectToString(Object) - Method in class org.jbiowh.core.logger.VerbLogger
-
Return the reference for this object
- MIXTURE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.MixturesTags
-
- MIXTURES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.MixturesTags
-
- MixturesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Mixtures XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- MORBIDMAPFILE - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- MorbidMapParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the parser for the OMIM morbidmap file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- MorbidMapParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.MorbidMapParser
-
- MOTIF - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- MultipleFieldXMLParser - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
This class is the Three Field XML Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- MultipleFieldXMLParser(String, String[]) - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
This constructor initialize the WH file manager and the WH DataSet
manager
- MySQLSCRIPT - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- ObjectFactory - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This object contains factory methods for each Java content interface and Java
element interface generated in the
org.jbiowh.core.datasets.pathway.kegg.kgml.xml package.
- ObjectFactory() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.ObjectFactory
-
Create a new ObjectFactory that can be used to create new instances of
schema derived classes for package:
org.jbiowh.core.datasets.pathway.kegg.kgml.xml
- OMIM - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIM entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OMIM() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- OMIM(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- OMIM(Long, long, long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- OMIM - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIM_ID - Variable in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- OMIMAV - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMAV entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMAV() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- OMIMAV(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- OMIMAV(Long, long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- OMIMAV - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMAVParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM TX field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OMIMAVParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMAVParser
-
- OMIMBasicParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM basic parser methods
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMBasicParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMBasicParser
-
- OMIMCD - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMCD entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCD() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- OMIMCD(OMIMCDPK) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- OMIMCD(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- OMIMCD - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMCDParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM CD field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCDParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCDParser
-
- oMIMCDPK - Variable in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- OMIMCDPK - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMCD PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCDPK() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- OMIMCDPK(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- OMIMCN - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMCN entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCN() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- OMIMCN(OMIMCNPK) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- OMIMCN(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- OMIMCN - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMCNParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM CN field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCNParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCNParser
-
- oMIMCNPK - Variable in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- OMIMCNPK - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMCN PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCNPK() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- OMIMCNPK(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- OMIMCS - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMCS entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCS() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- OMIMCS(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- OMIMCS(Long, long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- OMIMCS - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMCSData - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMCSData entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMCSData() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- OMIMCSData(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- OMIMCSData(Long, long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- OMIMCSDATA - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMCSParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM CS field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OMIMCSParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCSParser
-
- OMIMDataSetView - Class in org.jbiowh.gui.datasets.disease
-
This Class handled the OMIM View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.disease.OMIMDataSetView
-
Creates new form AbstractDataSetView
- OMIMED - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMED entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMED() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- OMIMED(OMIMEDPK) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- OMIMED(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- OMIMED - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMEDParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM ED field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMEDParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMEDParser
-
- oMIMEDPK - Variable in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- OMIMEDPK - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMED PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMEDPK() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- OMIMEDPK(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- OMIMFILE - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMFormatException - Exception in org.jbiowh.core.datasets.disease.omim.parser.exception
-
This Class is the OMIM bad format exception
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMFormatException(String) - Constructor for exception org.jbiowh.core.datasets.disease.omim.parser.exception.OMIMFormatException
-
- OMIMGeneMap - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMGeneMap entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMGeneMap() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- OMIMGeneMap(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- OMIMGeneMap(Long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- OMIMGENEMAP - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMGENEMAP_HAS_GENESYMBOL - Static variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMGENEMAP_HAS_GENESYMBOLTEMP - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMGENEMAP_HAS_OMIMMETHOD - Static variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMGENEMAP_HAS_OMIMMORBIDMAP - Static variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMGENEMAPTEMP - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMJpaController - Class in org.jbiowh.core.datasets.disease.omim.jpa.controller
-
This Class is the OMIM Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- OMIMJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.controller.OMIMJpaController
-
- OMIMLinks - Class in org.jbiowh.core.datasets.disease.omim.parser.links
-
This Class create all OMIM external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMListView - Class in org.jbiowh.gui.datasets.disease
-
This Class show the OMIM list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMListView(Collection<OMIM>, JComponent) - Constructor for class org.jbiowh.gui.datasets.disease.OMIMListView
-
Create the OMIMListView object
- OMIMMethod - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMMethod entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMMethod() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- OMIMMethod(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- OMIMMethod(Long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- OMIMMETHOD - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMMETHODTEMP - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMMorbidMap - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMMorbidMap entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMMorbidMap() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- OMIMMorbidMap(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- OMIMMorbidMap(Long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- OMIMMORBIDMAP - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMMORBIDMAP_HAS_GENESYMBOL - Static variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMMORBIDMAP_HAS_GENESYMBOLTEMP - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMParser - Class in org.jbiowh.core.datasets.disease.omim.parser
-
This Class is the OMIM parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- OMIMParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.OMIMParser
-
- OMIMRF - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMRF entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMRF() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- OMIMRF(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- OMIMRF(Long, long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- OMIMRF - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMRFParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM RF field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OMIMRFParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMRFParser
-
- OMIMSA - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMSA entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMSA() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- OMIMSA(Long) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- OMIMSA(Long, long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- OMIMSA - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMSAParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM SA field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OMIMSAParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMSAParser
-
- OMIMTables - Class in org.jbiowh.core.datasets.disease.omim.parser
-
This Class is the OMIM tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTabs - Class in org.jbiowh.core.datasets.disease.omim.parser.files.tags
-
This Class is the OMIM Tabs definition
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTabs() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- OMIMTI - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMTI entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTI() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- OMIMTI(OMIMTIPK) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- OMIMTI(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- OMIMTI - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMTIParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM TI field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTIParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTIParser
-
- oMIMTIPK - Variable in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- OMIMTIPK - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMTI PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTIPK() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- OMIMTIPK(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- OMIMTransfer - Class in org.jbiowh.core.datasets.disease.omim.jpa.transfer
-
This class handled the OMIM transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OMIMTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.transfer.OMIMTransfer
-
Create the OMIM transfer
- OMIMTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.transfer.OMIMTransfer
-
Create the OMIM transfer
- OMIMTX - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMTX entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTX() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- OMIMTX(OMIMTXPK) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- OMIMTX(OMIMTXPK, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- OMIMTX(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- OMIMTX - Variable in class org.jbiowh.core.datasets.disease.omim.parser.OMIMTables
-
- OMIMTXParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the OMIM TX field parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTXParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTXParser
-
- oMIMTXPK - Variable in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- OMIMTXPK - Class in org.jbiowh.core.datasets.disease.omim.jpa.entities
-
This Class is the OMIMTX PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OMIMTXPK() - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- OMIMTXPK(long, String) - Constructor for class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- OMIMTXTParser - Class in org.jbiowh.core.datasets.disease.omim.parser.files
-
This Class is the parser for the OMIM omim file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- OMIMTXTParser() - Constructor for class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTXTParser
-
- Ontology - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the Ontology Entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Ontology() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- Ontology(Long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- Ontology(Long, String, String, String, boolean, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- ONTOLOGY - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGY_HAS_ONTOLOGYSUBSET - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGY_HAS_ONTOLOGYSYNONYM - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGY_HAS_ONTOLOGYXREF - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- OntologyAlternativeId - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is OntologyAlternativeId entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyAlternativeId() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- OntologyAlternativeId(OntologyAlternativeIdPK) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- OntologyAlternativeId(long, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- ONTOLOGYALTERNATIVEID - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ontologyAlternativeIdPK - Variable in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- OntologyAlternativeIdPK - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyAlternativeIdPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyAlternativeIdPK() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- OntologyAlternativeIdPK(long, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- OntologyDataSetView - Class in org.jbiowh.gui.datasets.ontology
-
This Class handled the Ontology View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.ontology.OntologyDataSetView
-
Creates new form AbstractDataSetView
- OntologyhasOntologySynonym - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This class is the Ontology_has_OntologySynonym entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyhasOntologySynonym() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- OntologyhasOntologySynonym(OntologyhasOntologySynonymPK) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- OntologyhasOntologySynonym(long, long, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- ontologyhasOntologySynonymPK - Variable in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- OntologyhasOntologySynonymPK - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-26 16:29:19 +0100 (Mon, 26 Nov 2012) $
$LastChangedRevision: 323 $
- OntologyhasOntologySynonymPK() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- OntologyhasOntologySynonymPK(long, long, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- OntologyIsA - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is OntologyIsA entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyIsA() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- OntologyIsA(OntologyIsAPK) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- OntologyIsA(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- ONTOLOGYISA - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ontologyIsAPK - Variable in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- OntologyIsAPK - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyIsAPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyIsAPK() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- OntologyIsAPK(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- OntologyJpaController - Class in org.jbiowh.core.datasets.ontology.jpa.controller
-
This class is the Ontology Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- OntologyJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.controller.OntologyJpaController
-
- OntologyLinks - Class in org.jbiowh.core.datasets.ontology.parser.links
-
This Class create all Ontology external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-26 16:29:19 +0100 (Mon, 26 Nov 2012) $
$LastChangedRevision: 323 $
- OntologyListView - Class in org.jbiowh.gui.datasets.ontology
-
This Class is show the Ontology list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyListView(Collection<Ontology>, JComponent) - Constructor for class org.jbiowh.gui.datasets.ontology.OntologyListView
-
Create the Ontology List object
- OntologyParser - Class in org.jbiowh.core.datasets.ontology.parser
-
This Class is the Ontology parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- OntologyParser() - Constructor for class org.jbiowh.core.datasets.ontology.parser.OntologyParser
-
- OntologyPMID - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyPMID entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyPMID() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- OntologyPMID(OntologyPMIDPK) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- OntologyPMID(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- ONTOLOGYPMID - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ontologyPMIDPK - Variable in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- OntologyPMIDPK - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyPMIDPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyPMIDPK() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- OntologyPMIDPK(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- OntologyRelation - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyRelation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyRelation() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- OntologyRelation(OntologyRelationPK) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- OntologyRelation(OntologyRelationPK, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- OntologyRelation(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- ONTOLOGYRELATION - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ontologyRelationPK - Variable in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- OntologyRelationPK - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyRelationPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyRelationPK() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- OntologyRelationPK(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- OntologySubset - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologySubset entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologySubset() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- OntologySubset(Long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- OntologySubset(Long, String, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- ONTOLOGYSUBSET - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- OntologySynonym - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologySynonym entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologySynonym() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- OntologySynonym(Long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- OntologySynonym(Long, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- ONTOLOGYSYNONYM - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- OntologySynonymJpaController - Class in org.jbiowh.core.datasets.ontology.jpa.controller
-
This class is the OntologySynonym Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- OntologySynonymJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.controller.OntologySynonymJpaController
-
- OntologyTables - Class in org.jbiowh.core.datasets.ontology.parser
-
This Class is the Ontology Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyToConsider - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyToConsider entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyToConsider() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- OntologyToConsider(OntologyToConsiderPK) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- OntologyToConsider(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- ONTOLOGYTOCONSIDER - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ontologyToConsiderPK - Variable in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- OntologyToConsiderPK - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyToConsiderPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyToConsiderPK() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- OntologyToConsiderPK(long, long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- OntologyTransfer - Class in org.jbiowh.core.datasets.ontology.jpa.transfer
-
This class handled the Ontology transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $
$LastChangedRevision: 285 $
- OntologyTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.transfer.OntologyTransfer
-
Create the Ontology transfer
- OntologyTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.transfer.OntologyTransfer
-
Create the Ontology transfer
- ONTOLOGYWIDISATEMP - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGYWIDONTOLOGYSUBSET - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGYWIDRELATIONTEMP - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGYWIDSYNONYMTEMP - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGYWIDTOCONSIDERTEMP - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- ONTOLOGYWIDXREFTEMP - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- OntologyXRef - Class in org.jbiowh.core.datasets.ontology.jpa.entities
-
This Class is the OntologyXRef entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OntologyXRef() - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- OntologyXRef(Long) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- OntologyXRef(Long, String, String, String) - Constructor for class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- ONTOLOGYXREF - Variable in class org.jbiowh.core.datasets.ontology.parser.OntologyTables
-
- OpenActionListener - Class in org.jbiowh.gui.actions.jbiowh
-
This class is the open action for the main window
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- OpenActionListener(JBioWH, boolean) - Constructor for class org.jbiowh.gui.actions.jbiowh.OpenActionListener
-
Create the open action for the main window
- OpenActionListener(JBioWH, boolean, boolean) - Constructor for class org.jbiowh.gui.actions.jbiowh.OpenActionListener
-
Create the open action for the main window
- openConnection(boolean) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Open the connection using internal data
- openConnection(boolean) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Open the connection using internal data
- openConnection(boolean, boolean, boolean) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Create the WHDBMS factory and open the connection with the DBMS
- OpenCvType - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML OpenCvType Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- OpenCvType(String) - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
This constructor initialize the WH file manager and the WH DataSet
manager
- openSchema(WHDBMSFactory, boolean, boolean, boolean) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Open the schema provided by the WHDBMSFactory
- openSQLFile(File) - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Open the file f on the SQL Editor
- openSQLFile(BufferedReader) - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Open the BufferedReader reader on the SQL Editor
- OpenWHDB - Class in org.jbiowh.gui
-
This JDialog is to Open WHDB
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 396 $
- OpenWHDB(Frame, boolean, boolean) - Constructor for class org.jbiowh.gui.OpenWHDB
-
Creates new form OpenWHDB
- OpenWHDB(Frame, boolean, boolean, boolean) - Constructor for class org.jbiowh.gui.OpenWHDB
-
Creates new form OpenWHDB
- orderByPFrom() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Order the genes by its position on the chromosome
- org - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
- org.jbiowh.core.datasets.disease.omim.jpa.controller - package org.jbiowh.core.datasets.disease.omim.jpa.controller
-
- org.jbiowh.core.datasets.disease.omim.jpa.entities - package org.jbiowh.core.datasets.disease.omim.jpa.entities
-
- org.jbiowh.core.datasets.disease.omim.jpa.transfer - package org.jbiowh.core.datasets.disease.omim.jpa.transfer
-
- org.jbiowh.core.datasets.disease.omim.parser - package org.jbiowh.core.datasets.disease.omim.parser
-
- org.jbiowh.core.datasets.disease.omim.parser.exception - package org.jbiowh.core.datasets.disease.omim.parser.exception
-
- org.jbiowh.core.datasets.disease.omim.parser.files - package org.jbiowh.core.datasets.disease.omim.parser.files
-
- org.jbiowh.core.datasets.disease.omim.parser.files.tags - package org.jbiowh.core.datasets.disease.omim.parser.files.tags
-
- org.jbiowh.core.datasets.disease.omim.parser.links - package org.jbiowh.core.datasets.disease.omim.parser.links
-
- org.jbiowh.core.datasets.disease.omim.search - package org.jbiowh.core.datasets.disease.omim.search
-
- org.jbiowh.core.datasets.domain.pfam.jpa.controller - package org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
- org.jbiowh.core.datasets.domain.pfam.jpa.entities - package org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
- org.jbiowh.core.datasets.domain.pfam.jpa.transfer - package org.jbiowh.core.datasets.domain.pfam.jpa.transfer
-
- org.jbiowh.core.datasets.domain.pfam.parser - package org.jbiowh.core.datasets.domain.pfam.parser
-
- org.jbiowh.core.datasets.domain.pfam.parser.files - package org.jbiowh.core.datasets.domain.pfam.parser.files
-
- org.jbiowh.core.datasets.domain.pfam.parser.links - package org.jbiowh.core.datasets.domain.pfam.parser.links
-
- org.jbiowh.core.datasets.domain.pfam.search - package org.jbiowh.core.datasets.domain.pfam.search
-
- org.jbiowh.core.datasets.drug.drugbank.jpa.controller - package org.jbiowh.core.datasets.drug.drugbank.jpa.controller
-
- org.jbiowh.core.datasets.drug.drugbank.jpa.entities - package org.jbiowh.core.datasets.drug.drugbank.jpa.entities
-
- org.jbiowh.core.datasets.drug.drugbank.jpa.transfer - package org.jbiowh.core.datasets.drug.drugbank.jpa.transfer
-
- org.jbiowh.core.datasets.drug.drugbank.parser - package org.jbiowh.core.datasets.drug.drugbank.parser
-
- org.jbiowh.core.datasets.drug.drugbank.parser.links - package org.jbiowh.core.datasets.drug.drugbank.parser.links
-
- org.jbiowh.core.datasets.drug.drugbank.parser.utility - package org.jbiowh.core.datasets.drug.drugbank.parser.utility
-
- org.jbiowh.core.datasets.drug.drugbank.parser.xml - package org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
- org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags - package org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
- org.jbiowh.core.datasets.drug.drugbank.search - package org.jbiowh.core.datasets.drug.drugbank.search
-
- org.jbiowh.core.datasets.gene.jpa.controller - package org.jbiowh.core.datasets.gene.jpa.controller
-
- org.jbiowh.core.datasets.gene.jpa.entities.gene - package org.jbiowh.core.datasets.gene.jpa.entities.gene
-
- org.jbiowh.core.datasets.gene.jpa.entities.geneptt - package org.jbiowh.core.datasets.gene.jpa.entities.geneptt
-
- org.jbiowh.core.datasets.gene.jpa.transfer - package org.jbiowh.core.datasets.gene.jpa.transfer
-
- org.jbiowh.core.datasets.gene.parser - package org.jbiowh.core.datasets.gene.parser
-
- org.jbiowh.core.datasets.gene.parser.files - package org.jbiowh.core.datasets.gene.parser.files
-
- org.jbiowh.core.datasets.gene.parser.links - package org.jbiowh.core.datasets.gene.parser.links
-
- org.jbiowh.core.datasets.gene.search - package org.jbiowh.core.datasets.gene.search
-
- org.jbiowh.core.datasets.gene.utils - package org.jbiowh.core.datasets.gene.utils
-
- org.jbiowh.core.datasets.mainloader - package org.jbiowh.core.datasets.mainloader
-
- org.jbiowh.core.datasets.mainloader.controller - package org.jbiowh.core.datasets.mainloader.controller
-
- org.jbiowh.core.datasets.mainloader.entities - package org.jbiowh.core.datasets.mainloader.entities
-
- org.jbiowh.core.datasets.ontology.jpa.controller - package org.jbiowh.core.datasets.ontology.jpa.controller
-
- org.jbiowh.core.datasets.ontology.jpa.entities - package org.jbiowh.core.datasets.ontology.jpa.entities
-
- org.jbiowh.core.datasets.ontology.jpa.transfer - package org.jbiowh.core.datasets.ontology.jpa.transfer
-
- org.jbiowh.core.datasets.ontology.parser - package org.jbiowh.core.datasets.ontology.parser
-
- org.jbiowh.core.datasets.ontology.parser.links - package org.jbiowh.core.datasets.ontology.parser.links
-
- org.jbiowh.core.datasets.ontology.parser.xml - package org.jbiowh.core.datasets.ontology.parser.xml
-
- org.jbiowh.core.datasets.ontology.parser.xml.tags - package org.jbiowh.core.datasets.ontology.parser.xml.tags
-
- org.jbiowh.core.datasets.ontology.search - package org.jbiowh.core.datasets.ontology.search
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.controller - package org.jbiowh.core.datasets.pathway.kegg.jpa.controller
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound - package org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme - package org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene - package org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan - package org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway - package org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction - package org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction
-
- org.jbiowh.core.datasets.pathway.kegg.jpa.transfer - package org.jbiowh.core.datasets.pathway.kegg.jpa.transfer
-
- org.jbiowh.core.datasets.pathway.kegg.parser - package org.jbiowh.core.datasets.pathway.kegg.parser
-
- org.jbiowh.core.datasets.pathway.kegg.parser.gene - package org.jbiowh.core.datasets.pathway.kegg.parser.gene
-
- org.jbiowh.core.datasets.pathway.kegg.parser.kgml - package org.jbiowh.core.datasets.pathway.kegg.parser.kgml
-
- org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml - package org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
- org.jbiowh.core.datasets.pathway.kegg.parser.ligand - package org.jbiowh.core.datasets.pathway.kegg.parser.ligand
-
- org.jbiowh.core.datasets.pathway.kegg.parser.links - package org.jbiowh.core.datasets.pathway.kegg.parser.links
-
- org.jbiowh.core.datasets.pathway.kegg.parser.utility - package org.jbiowh.core.datasets.pathway.kegg.parser.utility
-
- org.jbiowh.core.datasets.pathway.kegg.search - package org.jbiowh.core.datasets.pathway.kegg.search
-
- org.jbiowh.core.datasets.ppi.jpa.controller - package org.jbiowh.core.datasets.ppi.jpa.controller
-
- org.jbiowh.core.datasets.ppi.jpa.entities - package org.jbiowh.core.datasets.ppi.jpa.entities
-
- org.jbiowh.core.datasets.ppi.jpa.transfer - package org.jbiowh.core.datasets.ppi.jpa.transfer
-
- org.jbiowh.core.datasets.ppi.parser - package org.jbiowh.core.datasets.ppi.parser
-
- org.jbiowh.core.datasets.ppi.parser.links - package org.jbiowh.core.datasets.ppi.parser.links
-
- org.jbiowh.core.datasets.ppi.parser.xml - package org.jbiowh.core.datasets.ppi.parser.xml
-
- org.jbiowh.core.datasets.ppi.parser.xml.tags - package org.jbiowh.core.datasets.ppi.parser.xml.tags
-
- org.jbiowh.core.datasets.protclust.jpa.controller - package org.jbiowh.core.datasets.protclust.jpa.controller
-
- org.jbiowh.core.datasets.protclust.jpa.entities - package org.jbiowh.core.datasets.protclust.jpa.entities
-
- org.jbiowh.core.datasets.protclust.jpa.transfer - package org.jbiowh.core.datasets.protclust.jpa.transfer
-
- org.jbiowh.core.datasets.protclust.parser - package org.jbiowh.core.datasets.protclust.parser
-
- org.jbiowh.core.datasets.protclust.parser.links - package org.jbiowh.core.datasets.protclust.parser.links
-
- org.jbiowh.core.datasets.protclust.parser.xml - package org.jbiowh.core.datasets.protclust.parser.xml
-
- org.jbiowh.core.datasets.protclust.parser.xml.tags - package org.jbiowh.core.datasets.protclust.parser.xml.tags
-
- org.jbiowh.core.datasets.protclust.search - package org.jbiowh.core.datasets.protclust.search
-
- org.jbiowh.core.datasets.protein.jpa.controller - package org.jbiowh.core.datasets.protein.jpa.controller
-
- org.jbiowh.core.datasets.protein.jpa.entities - package org.jbiowh.core.datasets.protein.jpa.entities
-
- org.jbiowh.core.datasets.protein.jpa.transfer - package org.jbiowh.core.datasets.protein.jpa.transfer
-
- org.jbiowh.core.datasets.protein.parser - package org.jbiowh.core.datasets.protein.parser
-
- org.jbiowh.core.datasets.protein.parser.links - package org.jbiowh.core.datasets.protein.parser.links
-
- org.jbiowh.core.datasets.protein.parser.xml - package org.jbiowh.core.datasets.protein.parser.xml
-
- org.jbiowh.core.datasets.protein.parser.xml.tags - package org.jbiowh.core.datasets.protein.parser.xml.tags
-
- org.jbiowh.core.datasets.protein.search - package org.jbiowh.core.datasets.protein.search
-
- org.jbiowh.core.datasets.protein.utils - package org.jbiowh.core.datasets.protein.utils
-
- org.jbiowh.core.datasets.taxonomy.jpa.controller - package org.jbiowh.core.datasets.taxonomy.jpa.controller
-
- org.jbiowh.core.datasets.taxonomy.jpa.entities - package org.jbiowh.core.datasets.taxonomy.jpa.entities
-
- org.jbiowh.core.datasets.taxonomy.jpa.transfer - package org.jbiowh.core.datasets.taxonomy.jpa.transfer
-
- org.jbiowh.core.datasets.taxonomy.parser - package org.jbiowh.core.datasets.taxonomy.parser
-
- org.jbiowh.core.datasets.taxonomy.parser.links - package org.jbiowh.core.datasets.taxonomy.parser.links
-
- org.jbiowh.core.datasets.taxonomy.search - package org.jbiowh.core.datasets.taxonomy.search
-
- org.jbiowh.core.datasets.taxonomy.utils - package org.jbiowh.core.datasets.taxonomy.utils
-
- org.jbiowh.core.dbms - package org.jbiowh.core.dbms
-
- org.jbiowh.core.dbms.mysql - package org.jbiowh.core.dbms.mysql
-
- org.jbiowh.core.dbms.sql - package org.jbiowh.core.dbms.sql
-
- org.jbiowh.core.dbms.sql.exception - package org.jbiowh.core.dbms.sql.exception
-
- org.jbiowh.core.dbms.transfer - package org.jbiowh.core.dbms.transfer
-
- org.jbiowh.core.logger - package org.jbiowh.core.logger
-
- org.jbiowh.core.utility.constrains - package org.jbiowh.core.utility.constrains
-
- org.jbiowh.core.utility.controller - package org.jbiowh.core.utility.controller
-
- org.jbiowh.core.utility.controller.exceptions - package org.jbiowh.core.utility.controller.exceptions
-
- org.jbiowh.core.utility.graph - package org.jbiowh.core.utility.graph
-
- org.jbiowh.core.utility.jparelationship - package org.jbiowh.core.utility.jparelationship
-
- org.jbiowh.core.utility.jparelationship.graph - package org.jbiowh.core.utility.jparelationship.graph
-
- org.jbiowh.core.utility.utils - package org.jbiowh.core.utility.utils
-
- org.jbiowh.gui - package org.jbiowh.gui
-
- org.jbiowh.gui.actions.jbiowh - package org.jbiowh.gui.actions.jbiowh
-
- org.jbiowh.gui.actions.tabbedpanel - package org.jbiowh.gui.actions.tabbedpanel
-
- org.jbiowh.gui.component.dialog.progress - package org.jbiowh.gui.component.dialog.progress
-
- org.jbiowh.gui.component.file - package org.jbiowh.gui.component.file
-
- org.jbiowh.gui.component.graph - package org.jbiowh.gui.component.graph
-
- org.jbiowh.gui.component.icons - package org.jbiowh.gui.component.icons
-
- org.jbiowh.gui.component.panel - package org.jbiowh.gui.component.panel
-
- org.jbiowh.gui.component.panel.list - package org.jbiowh.gui.component.panel.list
-
- org.jbiowh.gui.component.panel.result - package org.jbiowh.gui.component.panel.result
-
- org.jbiowh.gui.component.panel.sql - package org.jbiowh.gui.component.panel.sql
-
- org.jbiowh.gui.component.panel.sql.syntax - package org.jbiowh.gui.component.panel.sql.syntax
-
- org.jbiowh.gui.component.panel.tabbedpanel - package org.jbiowh.gui.component.panel.tabbedpanel
-
- org.jbiowh.gui.component.popup - package org.jbiowh.gui.component.popup
-
- org.jbiowh.gui.component.table.model - package org.jbiowh.gui.component.table.model
-
- org.jbiowh.gui.component.table.model.data - package org.jbiowh.gui.component.table.model.data
-
- org.jbiowh.gui.component.tree - package org.jbiowh.gui.component.tree
-
- org.jbiowh.gui.datasets - package org.jbiowh.gui.datasets
-
- org.jbiowh.gui.datasets.disease - package org.jbiowh.gui.datasets.disease
-
- org.jbiowh.gui.datasets.domain.pfam - package org.jbiowh.gui.datasets.domain.pfam
-
- org.jbiowh.gui.datasets.drug - package org.jbiowh.gui.datasets.drug
-
- org.jbiowh.gui.datasets.gene - package org.jbiowh.gui.datasets.gene
-
- org.jbiowh.gui.datasets.ontology - package org.jbiowh.gui.datasets.ontology
-
- org.jbiowh.gui.datasets.pathway - package org.jbiowh.gui.datasets.pathway
-
- org.jbiowh.gui.datasets.pathway.compound - package org.jbiowh.gui.datasets.pathway.compound
-
- org.jbiowh.gui.datasets.pathway.enzyme - package org.jbiowh.gui.datasets.pathway.enzyme
-
- org.jbiowh.gui.datasets.pathway.gene - package org.jbiowh.gui.datasets.pathway.gene
-
- org.jbiowh.gui.datasets.pathway.glycan - package org.jbiowh.gui.datasets.pathway.glycan
-
- org.jbiowh.gui.datasets.pathway.reaction - package org.jbiowh.gui.datasets.pathway.reaction
-
- org.jbiowh.gui.datasets.protein - package org.jbiowh.gui.datasets.protein
-
- org.jbiowh.gui.datasets.protfam - package org.jbiowh.gui.datasets.protfam
-
- org.jbiowh.gui.datasets.taxonomy - package org.jbiowh.gui.datasets.taxonomy
-
- org.jbiowh.gui.save - package org.jbiowh.gui.save
-
- org.jbiowh.gui.sqltables - package org.jbiowh.gui.sqltables
-
- org.jbiowh.gui.sqltables.exception - package org.jbiowh.gui.sqltables.exception
-
- org.jbiowh.gui.sqltables.listener - package org.jbiowh.gui.sqltables.listener
-
- org.jbiowh.tools.dataset - package org.jbiowh.tools.dataset
-
- org.jbiowh.tools.defaultTools - package org.jbiowh.tools.defaultTools
-
- org.jbiowh.tools.examples - package org.jbiowh.tools.examples
-
- org.jbiowh.tools.gene - package org.jbiowh.tools.gene
-
- org.jbiowh.tools.protein - package org.jbiowh.tools.protein
-
- org.jbiowh.tools.prototypes.insert - package org.jbiowh.tools.prototypes.insert
-
- org.jbiowh.tools.prototypes.temp - package org.jbiowh.tools.prototypes.temp
-
- org.jbiowh.tools.taxonomy - package org.jbiowh.tools.taxonomy
-
- Organism - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Organism tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Organism() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
This constructor initialize the WH file manager and the WH DataSet
manager
- OrganismTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Organism tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- OrganismTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.OrganismTags
-
- ORTHOLOGY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- ORTHOLOGYENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- ORTHOLOGYENTRY - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- ORTHOLOGYNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- ORTHOLOGYNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- PACKAGER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PackagersTags
-
- PACKAGERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PackagersTags
-
- PackagersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Packagers XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Parameter - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Parameter Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Parameter() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParameterList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML ParameterList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParameterList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParameterListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ParameterList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParameterListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterListTags
-
- ParameterTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Parameter Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParameterTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParameterTags
-
- parentComponent - Variable in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
The parent JComponent
- parentComponent - Variable in class org.jbiowh.gui.component.panel.list.AbstractListView
-
- parentComponent - Variable in class org.jbiowh.gui.component.popup.BasicPopup
-
The parent component for this popup
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMAVParser
-
Get the OMIMAV object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCDParser
-
Get the OMIMCD object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCNParser
-
Get the OMIMCN object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMCSParser
-
Get the OMIMCS object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMEDParser
-
Get the OMIMED object parsing the OMIM txt file
- parse(BufferedReader, Long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMRFParser
-
Get the OMIMRF object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMSAParser
-
Get the OMIMSA object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTIParser
-
Get the OMIMTI object parsing the OMIM txt file
- parse(BufferedReader, long) - Method in class org.jbiowh.core.datasets.disease.omim.parser.files.OMIMTXParser
-
Get the OMIMTX object parsing the OMIM txt file
- parseDefaultOptions(OptionParser, String[], boolean) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Method to parse the command line arguments
- ParseFactory - Interface in org.jbiowh.core.datasets.mainloader
-
This interface is the Parse Factory to parse any data source
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParseFiles - Class in org.jbiowh.core.utility.utils
-
This Class is handled the TSV files to parse data sources
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- parseOption(OptionSet, String, Object, boolean, boolean) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Parse the command line option
- parseOptions(String[]) - Method in class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
This method parse the command line arguments with the JBioWH options
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighbors
-
Method to parse the command line arguments
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighborTax
-
Method to parse the command line arguments
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.DrugPathwayGraph
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindALLHumProt
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindALLHumProtinGO
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindALLHumProtinGOwithConst
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FindGenefromDrug
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.examples.FrecPathGeneNeighbors
-
Method to parse the command line arguments
- parseOptions(String[]) - Method in class org.jbiowh.tools.gene.FindGenefromProteinGi
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.protein.FindProtein
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.protein.FindProteinFromTaxonomy
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.prototypes.insert.InsertDBToDB
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.prototypes.temp.Test
-
- parseOptions(String[]) - Method in class org.jbiowh.tools.taxonomy.FindTaxonomyGraph
-
- Participant - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Participant Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Participant() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParticipantList - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParticipantList() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ParticipantListTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML ParticipantList Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParticipantListTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantListTags
-
- ParticipantTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Participant Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ParticipantTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.ParticipantTags
-
- Partner - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml
-
This class is the Partner XML parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Partner() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
This constructor initialize the WH file manager and the WH DataSet
manager
- PARTNER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BondTypeTags
-
- PARTNER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PartnerTags
-
- PartnerTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Partner XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PartnerTags() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PartnerTags
-
- PATENT - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
- PATENTS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PatentsTags
-
- PatentsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Patents XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Pathway - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Pathway XML parser from JAXB for KGML file format
- Pathway() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
- PATHWAY - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- PathwayPrintOnTSVFile - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml
-
This class is print on the TSV file forma to be inserted on the DBMS
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- PFAM - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
- PFAMA_HAS_ONTOLOGY - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_HAS_PFAMARCHITECTURE - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_HAS_PFAMLITERATUREREFERENCES - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_NCBI - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMA_ORIG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAbioWH - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamAbioWH entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $ $LastChangedRevision: 377 $
- PfamAbioWH() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- PfamAbioWH(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- PfamAbioWH(Long, String, String, String, String, String, String, String, double, double, double, double, double, double, String, int, String, double, double, double, double, double, double, Date, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- PFAMABIOWH - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAbioWHJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamAbioWH Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PfamAbioWHJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamAbioWHJpaController
-
- PfamADatabaseLinks - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamADatabaseLinks entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamADatabaseLinks() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- PfamADatabaseLinks(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- PfamADatabaseLinks(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- PFAMADATABASELINKS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAhasPfamLiteratureReferences - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamA_has_PfamLiteratureReferences entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamAhasPfamLiteratureReferences() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- PfamAhasPfamLiteratureReferences(PfamAhasPfamLiteratureReferencesPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- PfamAhasPfamLiteratureReferences(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- pfamAhasPfamLiteratureReferencesPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- PfamAhasPfamLiteratureReferencesPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamAhasPfamLiteratureReferences PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamAhasPfamLiteratureReferencesPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- PfamAhasPfamLiteratureReferencesPK(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- PFAMAINTERACTIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamANCBIReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamANCBIReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamANCBIReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- PfamANCBIReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- PfamANCBIReg(Long, long, long, int, int, int, int, int, int, double, String, double, String, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- PFAMANCBIREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamAPDBReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamAPDBReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamAPDBReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- PfamAPDBReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- PfamAPDBReg(Long, long, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- PFAMAPDBREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamArchitecture - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamArchitecture entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamArchitecture() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- PfamArchitecture(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- PfamArchitecture(Long, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- PFAMARCHITECTURE - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamArchitectureJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamArchitecture Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamArchitectureJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamArchitectureJpaController
-
- PfamARegFullInsignificant - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegFullInsignificant entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamARegFullInsignificant() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- PfamARegFullInsignificant(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- PfamARegFullInsignificant(Long, long, long, long, int, int, int, int, double, String, double, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- PFAMAREGFULLINSIGNIFICANT - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamARegFullInsignificantJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamARegFullInsignificant Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PfamARegFullInsignificantJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullInsignificantJpaController
-
- PfamARegFullSignificant - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegFullSignificant entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamARegFullSignificant() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- PfamARegFullSignificant(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- PfamARegFullSignificant(Long, long, long, long, int, int, int, int, int, int, double, String, double, String, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- PFAMAREGFULLSIGNIFICANT - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamARegFullSignificantJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamARegFullSignificant Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PfamARegFullSignificantJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamARegFullSignificantJpaController
-
- PFAMAREGFULLSIGNIFICANTTEMP - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamARegSeed - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegSeed entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamARegSeed() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeed(PfamARegSeedPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeed(PfamARegSeedPK, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeed(long, long, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PFAMAREGSEED - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- pfamARegSeedPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- PfamARegSeedPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamARegSeed PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamARegSeedPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- PfamARegSeedPK(long, long, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- PFamATransfer - Class in org.jbiowh.core.datasets.domain.pfam.jpa.transfer
-
This class handled the PFAM transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PFamATransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.transfer.PFamATransfer
-
Create the PFamA transfer
- PFamATransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.transfer.PFamATransfer
-
Create the PFamA transfer
- PfamBbioWH - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamBbioWH entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamBbioWH() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- PfamBbioWH(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- PFAMBBIOWH - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamBbioWHJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This Class is the PfamBbioWH Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamBbioWHJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamBbioWHJpaController
-
- PfamBReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamBReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamBReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- PfamBReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- PfamBReg(Long, long, long, int, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- PFAMBREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamClanDatabaseLinks - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamClanDatabaseLinks entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamClanDatabaseLinks() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- PfamClanDatabaseLinks(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- PfamClanDatabaseLinks(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- PFAMCLANDATABASELINKS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamClans - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is PfamClans entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamClans() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- PfamClans(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- PfamClans(Long, String, String, String, Date) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- PFAMCLANS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCLANS_HAS_PFAMA - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCLANS_HAS_PFAMARCHITECTURE - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCLANS_HAS_PFAMLITERATUREREFERENCES - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamClanshasPfamLiteratureReferences - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamClans_has_PfamLiteratureReferences entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamClanshasPfamLiteratureReferences() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- PfamClanshasPfamLiteratureReferences(PfamClanshasPfamLiteratureReferencesPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- PfamClanshasPfamLiteratureReferences(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- pfamClanshasPfamLiteratureReferencesPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- PfamClanshasPfamLiteratureReferencesPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamClanshasPfamLiteratureReferences PK
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamClanshasPfamLiteratureReferencesPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- PfamClanshasPfamLiteratureReferencesPK(long, long, short) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- PfamClansJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamClans Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamClansJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamClansJpaController
-
- PfamCompleteProteomes - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamCompleteProteomes entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamCompleteProteomes() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- PfamCompleteProteomes(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- PfamCompleteProteomes(Long, int, int, int, int, int, int, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- PFAMCOMPLETEPROTEOMES - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMCOMPLETEPROTEOMES_HAS_PFAMSEQ - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamCompleteProteomesJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamCompleteProteomes Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamCompleteProteomesJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamCompleteProteomesJpaController
-
- PfamContextRegions - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamContextRegions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamContextRegions() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- PfamContextRegions(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- PfamContextRegions(Long, long, long, int, int, double) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- PFAMCONTEXTREGIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamDataSetView - Class in org.jbiowh.gui.datasets.domain.pfam
-
This class handled the PFam View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-04 11:38:52 +0100
(Tue, 04 Dec 2012) $ $LastChangedRevision: 377 $
- PFamDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.domain.pfam.PFamDataSetView
-
Creates new form AbstractDataSetView
- PfamInterpro - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamInterpro entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamInterpro() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- PfamInterpro(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- PfamInterpro(Long, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- PFAMINTERPRO - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamLinks - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFAM external links
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PFamListView - Class in org.jbiowh.gui.datasets.domain.pfam
-
This class shows the Pfam List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PFamListView(Collection<PfamAbioWH>, JComponent) - Constructor for class org.jbiowh.gui.datasets.domain.pfam.PFamListView
-
Create the Pfam List object
- PfamLiteratureReferences - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamLiteratureReferences entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamLiteratureReferences() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- PfamLiteratureReferences(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- PFAMLITERATUREREFERENCES - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamLiteratureReferencesJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamLiteratureReferences Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamLiteratureReferencesJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamLiteratureReferencesJpaController
-
- PFAMMARKUP_HAS_PROTEIN - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamMarkupKey - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamMarkupKey entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamMarkupKey() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- PfamMarkupKey(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- PFAMMARKUPKEY - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamNestedLocations - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamNestedLocations entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamNestedLocations() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- PfamNestedLocations(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- PfamNestedLocations(Long, long, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- PFAMNESTEDLOCATIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamOntologyLink - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFAM-Ontology external links
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamOtherReg - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamOtherReg entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamOtherReg() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- PfamOtherReg(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- PfamOtherReg(Long, long, int, int, String, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- PFAMOTHERREG - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamParser - Class in org.jbiowh.core.datasets.domain.pfam.parser
-
This class is the Pfam Parser
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PFamParser() - Constructor for class org.jbiowh.core.datasets.domain.pfam.parser.PFamParser
-
- PfamPDB - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamPDB entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamPDB() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- PfamPDB(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- PfamPDB(Long, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- PFAMPDB - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamPDBResidueData - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamPDBResidueData entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamPDBResidueData() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- PfamPDBResidueData(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- PfamPDBResidueData(Long, long, long, String, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- PFAMPDBRESIDUEDATA - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFamProteinLink - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFam-Protein external link
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamProteomeRegions - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamProteomeRegions entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PfamProteomeRegions() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegions(PfamProteomeRegionsPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegions(PfamProteomeRegionsPK, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegions(long, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PFAMPROTEOMEREGIONS - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamProteomeRegionsJpaController - Class in org.jbiowh.core.datasets.domain.pfam.jpa.controller
-
This class is the PfamProteomeRegions Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PfamProteomeRegionsJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.controller.PfamProteomeRegionsJpaController
-
- pfamProteomeRegionsPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- PfamProteomeRegionsPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamProteomeRegions PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamProteomeRegionsPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- PfamProteomeRegionsPK(long, long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- PFAMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PFamsTags
-
- PFAMSEQ_HAS_PROTEIN - Static variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PFAMSEQ_HAS_UNIPROTID - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamSeqDisulphide - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeqDisulphide entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamSeqDisulphide() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- PfamSeqDisulphide(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- PfamSeqDisulphide(Long, long, int) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- PFAMSEQDISULPHIDE - Variable in class org.jbiowh.core.datasets.domain.pfam.parser.PFamTables
-
- PfamSeqhasProtein - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeq_has_Protein entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamSeqhasProtein() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- PfamSeqhasProtein(PfamSeqhasProteinPK) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- PfamSeqhasProtein(long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- pfamSeqhasProteinPK - Variable in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- PfamSeqhasProteinPK - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeqhasProtein PK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 344 $
- PfamSeqhasProteinPK() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- PfamSeqhasProteinPK(long, long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- PfamSeqhasUniProtId - Class in org.jbiowh.core.datasets.domain.pfam.jpa.entities
-
This class is the PfamSeq_has_UniProtId entity
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-27 12:19:50 +0100 (Tue, 27 Nov 2012) $ $LastChangedRevision: 344 $
- PfamSeqhasUniProtId() - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- PfamSeqhasUniProtId(Long) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- PfamSeqhasUniProtId(Long, String) - Constructor for class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- PFamSQLfiles - Class in org.jbiowh.core.datasets.domain.pfam.parser.files
-
This class load the Pfam SQL database into the JBioWH relational schema
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100
(Tue, 19 Mar 2013) $ $LastChangedRevision: 515 $
- PFamSQLfiles() - Constructor for class org.jbiowh.core.datasets.domain.pfam.parser.files.PFamSQLfiles
-
- PFamSQLReader - Class in org.jbiowh.core.datasets.domain.pfam.parser.files
-
This class read the Pfam SQL script and execute it
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PFamSQLReader() - Constructor for class org.jbiowh.core.datasets.domain.pfam.parser.files.PFamSQLReader
-
- PFamsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the PFams XMl Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PFamTables - Class in org.jbiowh.core.datasets.domain.pfam.parser
-
This Class is the Pfam Table list
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- PFamTaxonomyLink - Class in org.jbiowh.core.datasets.domain.pfam.parser.links
-
This Class is the PFAM-Taxonomy external link
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- PFROM - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- PHARMACOLOGY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- PLENGTH - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- populate(Object) - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyGraph
-
Creates the Taxonomy graph from the parent Tax Id
- populate(Object, int) - Method in class org.jbiowh.core.datasets.taxonomy.utils.TaxonomyGraph
-
Creates the Taxonomy graph from the parent Tax Id with a depth limit If
depth is equal to -1 there is not limit
- populate(Object) - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
Populates the graph from the JBioWH main entity in the object o
- populate(Object, int) - Method in class org.jbiowh.core.utility.graph.BioWHGraph
-
The recursive function to populate the graph from the JBioWH main entity
in the object o
- PopupConstrainPanel - Class in org.jbiowh.gui.component.popup
-
This Class is the Constrains Panel Popup Menu
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PopupConstrainPanel(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupConstrainPanel
-
- PopupCreateTable - Class in org.jbiowh.gui.component.popup
-
This Class is the Create table dialog popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupCreateTable(JComponent, JTable) - Constructor for class org.jbiowh.gui.component.popup.PopupCreateTable
-
Create the popup on the CreateTable Dialog
- PopupListView - Class in org.jbiowh.gui.component.popup
-
This Class is the List View's Popup Menu
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PopupListView(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupListView
-
Create the PopupListView object
- PopupResultTab - Class in org.jbiowh.gui.component.popup
-
This Class is the ResultTab panel popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PopupResultTab(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupResultTab
-
Create the PopupListView object
- PopupSearchConstrain - Class in org.jbiowh.gui.component.popup
-
This Class is the Constrains Table Popup Menu on SearchPanel
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupSearchConstrain(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupSearchConstrain
-
- PopupSQLEditor - Class in org.jbiowh.gui.component.popup
-
This Class is the SQL Editor popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupSQLEditor(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupSQLEditor
-
- PopupSQLEditorTables - Class in org.jbiowh.gui.component.popup
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- PopupSQLEditorTables(JComponent, Set<String>) - Constructor for class org.jbiowh.gui.component.popup.PopupSQLEditorTables
-
- PopupSQLSchema - Class in org.jbiowh.gui.component.popup
-
This Class is the SQLTablesTab panel popup
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- PopupSQLSchema(JComponent) - Constructor for class org.jbiowh.gui.component.popup.PopupSQLSchema
-
Creates the SQLTables popup
- POSITION - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.BondTypeTags
-
- POSITION - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- POSITION1 - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- POSITION2 - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- PreexistingEntityException - Exception in org.jbiowh.core.utility.controller.exceptions
-
- PreexistingEntityException(String, Throwable) - Constructor for exception org.jbiowh.core.utility.controller.exceptions.PreexistingEntityException
-
- PreexistingEntityException(String) - Constructor for exception org.jbiowh.core.utility.controller.exceptions.PreexistingEntityException
-
- PRICE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- PRICES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PricesTags
-
- PricesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Prices XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- print(String) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
This method print in both file, the result and the System.out and does
not includes the end of line
- printDefaultHelp() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Method to print the help
- printHelp() - Method in class org.jbiowh.core.datasets.mainloader.DataSetLoader
-
- printHelp() - Method in class org.jbiowh.tools.dataset.DataSetReport
-
- printHelp() - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighbors
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.AntibioticGeneNeighborTax
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.examples.DrugPathwayGraph
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindALLHumProt
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindALLHumProtinGO
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindALLHumProtinGOwithConst
-
- printHelp() - Method in class org.jbiowh.tools.examples.FindGenefromDrug
-
- printHelp() - Method in class org.jbiowh.tools.examples.FrecPathGeneNeighbors
-
Method to print the help
- printHelp() - Method in class org.jbiowh.tools.gene.FindGenefromProteinGi
-
- printHelp() - Method in class org.jbiowh.tools.gene.GenesDrugsFromTaxonomyFamily
-
- printHelp() - Method in class org.jbiowh.tools.protein.FindProtein
-
- printHelp() - Method in class org.jbiowh.tools.protein.FindProteinFromTaxonomy
-
- printHelp() - Method in class org.jbiowh.tools.prototypes.insert.InsertDBToDB
-
- printHelp() - Method in class org.jbiowh.tools.prototypes.temp.Test
-
- printHelp() - Method in class org.jbiowh.tools.taxonomy.FindTaxonomyGraph
-
- println(String) - Method in class org.jbiowh.tools.defaultTools.AbstractDefaultTool
-
This method print in both file, the result and the System.out and
includes the end of line
- printObjectReference(Object) - Method in class org.jbiowh.core.logger.VerbLogger
-
Print the object reference
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.gene.KEGGGene
-
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGCompound
-
Print the Compound entry on the TSV file set
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGEnzyme
-
Print the Enzyme entry on the TSV file set
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGGlycan
-
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGReaction
-
Print the Reaction entry on the TSV file set
- printOnTSVFile() - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.ligand.KEGGRPair
-
Print the Rpair entry on the TSV file set
- printOnTSVFile() - Method in interface org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFactory
-
- printOnTSVFile(String, String, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFile(String, Integer, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFile(String, boolean, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFile(String, Long, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Print on TSV file
- printOnTSVFileArrayListValue(boolean, long, String, String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserEntry
-
Print into the fileName TSV file the KEGG's field data
- printPathwayOnTSVFile(Pathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.PathwayPrintOnTSVFile
-
Print on TSV file the Pathway object loaded from a KGML file
- printProteinName(PrintWriter, List<Protein>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinUtils
-
Print the protein ID (name) on the write file
- printProteinName(PrintStream, List<Protein>) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinUtils
-
Print the protein ID (name) on the PrintStream file
- PRODUCT - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- Product - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Product XML parser from JAXB for KGML file format
- Product() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
- product - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
- PRODUCT - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- ProgressDialog - Class in org.jbiowh.gui.component.dialog.progress
-
- ProgressDialog(Frame, boolean) - Constructor for class org.jbiowh.gui.component.dialog.progress.ProgressDialog
-
Creates new form ProgressDialog
- PROPERTY - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
- Property - Class in org.jbiowh.core.datasets.protclust.parser.xml
-
This Class is the Property XMl parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Property(String, String) - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.Property
-
- PROPERTY - Variable in class org.jbiowh.core.datasets.protclust.parser.xml.tags.PropertyTags
-
- PropertyTags - Class in org.jbiowh.core.datasets.protclust.parser.xml.tags
-
This Class is the Property XML tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- PropertyTags() - Constructor for class org.jbiowh.core.datasets.protclust.parser.xml.tags.PropertyTags
-
- PropertyTypeTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the PropertyType XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Protein - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- Protein() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- Protein(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- Protein(Long, String, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- PROTEIN - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANK - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANKASCARRIERS - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANKASENZYME - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_DRUGBANKASTRANSPORTERS - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_GENEINFO - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_GENEPTT - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_KEGGENZYME - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_ONTOLOGY - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_PROTEINKEYWORD - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_TAXONOMY - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEIN_HAS_TAXONOMYHOST - Static variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinAccessionNumber - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Accession NUmber entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinAccessionNumber() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumber(ProteinAccessionNumberPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumber(ProteinAccessionNumberPK, int) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumber(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- PROTEINACCESSIONNUMBER - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinAccessionNumberPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- ProteinAccessionNumberPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinAccessionNumberPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinAccessionNumberPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- ProteinAccessionNumberPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- PROTEINBINDING - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- ProteinBioCyc - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein BioCyc entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinBioCyc() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- ProteinBioCyc(ProteinBioCycPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- ProteinBioCyc(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- PROTEINBIOCYC - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinBioCycPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- ProteinBioCycPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinBioCycPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinBioCycPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- ProteinBioCycPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- PROTEINBIOCYCTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinComment - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinComment() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- ProteinComment(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- ProteinComment(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- PROTEINCOMMENT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinCommentConflict - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentConflict entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentConflict() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- ProteinCommentConflict(ProteinCommentConflictPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- ProteinCommentConflict(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- PROTEINCOMMENTCONFLICT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentConflictPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- ProteinCommentConflictPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentConflictPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentConflictPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- ProteinCommentConflictPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- ProteinCommentEvent - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Event entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentEvent() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- ProteinCommentEvent(ProteinCommentEventPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- ProteinCommentEvent(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- PROTEINCOMMENTEVENT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentEventPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- ProteinCommentEventPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentEventPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentEventPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- ProteinCommentEventPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- ProteinCommentInteract - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Interact entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentInteract() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteract(ProteinCommentInteractPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteract(ProteinCommentInteractPK, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteract(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- PROTEINCOMMENTINTERACT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentInteractPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- ProteinCommentInteractPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentInteractPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentInteractPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- ProteinCommentInteractPK(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- ProteinCommentIsoform - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Isoform entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentIsoform() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- ProteinCommentIsoform(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- ProteinCommentIsoform(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- PROTEINCOMMENTISOFORM - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinCommentLink - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Comment Link entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentLink() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- ProteinCommentLink(ProteinCommentLinkPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- ProteinCommentLink(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- PROTEINCOMMENTLINK - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinCommentLinkPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- ProteinCommentLinkPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinCommentLinkPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentLinkPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- ProteinCommentLinkPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- ProteinCommentSubCellularLocation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinCommentSubCellularLocation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- ProteinCommentSubCellularLocation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- ProteinCommentSubCellularLocation(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- PROTEINCOMMENTSUBCELLULARLOCATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinDataSetView - Class in org.jbiowh.gui.datasets.protein
-
This Class handled the Protein View
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-04 11:38:29 +0100
(Tue, 04 Dec 2012) $ $LastChangedRevision: 396 $
- ProteinDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.protein.ProteinDataSetView
-
Creates new form AbstractDataSetView
- ProteinDBReference - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein DB reference entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDBReference() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- ProteinDBReference(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- ProteinDBReference(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- PROTEINDBREFERENCE - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinDBReferenceProperty - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is Protein DB Reference Property entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDBReferenceProperty() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- ProteinDBReferenceProperty(ProteinDBReferencePropertyPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- ProteinDBReferenceProperty(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- PROTEINDBREFERENCEPROPERTY - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinDBReferencePropertyPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- ProteinDBReferencePropertyPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinDBReferencePropertyPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDBReferencePropertyPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- ProteinDBReferencePropertyPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- ProteinDIP - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein DIP entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDIP() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- ProteinDIP(ProteinDIPPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- ProteinDIP(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- PROTEINDIP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinDIPPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- ProteinDIPPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinDIPPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDIPPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- ProteinDIPPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- PROTEINDIPTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinDrugBank - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein DrugBank entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDrugBank() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- ProteinDrugBank(ProteinDrugBankPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- ProteinDrugBank(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- PROTEINDRUGBANK - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinDrugBankPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- ProteinDrugBankPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinDrugBankPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinDrugBankPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- ProteinDrugBankPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- PROTEINDRUGBANKTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinEC - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein EC entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinEC() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- ProteinEC(ProteinECPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- ProteinEC(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- PROTEINEC - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinECPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- ProteinECPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinECPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinECPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- ProteinECPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- PROTEINECTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinFastatoFile(String) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Read the Uniprot Id from the file name and print the fasta format in the
PrintWriter passed to the constructor
- proteinFastatoFile(Collection) - Method in class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
The method receives a collection and print the proteins in the file
passed to the constructor
If the objects collection is a collection
of string with the UniProt Id or Accession Code the method search the
protein and print the fasta format.
If the objects collection is a
collection of Proteins the method print the fasta format.
- ProteinFeature - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Feature entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinFeature() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- ProteinFeature(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- ProteinFeature(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- PROTEINFEATURE - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinFeatureVariation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Feature Variation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinFeatureVariation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- ProteinFeatureVariation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- ProteinFeatureVariation(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- PROTEINFEATUREVARIATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinFromOther - Class in org.jbiowh.core.datasets.protein.utils
-
This class is used to retrieve proteins from other JBioWH biological objects
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- ProteinFromOther() - Constructor for class org.jbiowh.core.datasets.protein.utils.ProteinFromOther
-
Create a ProteinFromOther object to retrieve proteins
- PROTEINGENE - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinGeneLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_Gene relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinGeneLocation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinGeneLocation entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinGeneLocation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- ProteinGeneLocation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- ProteinGeneLocation(Long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- PROTEINGENELOCATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINGENENAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinGenePTTLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class populates the Protein_has_GenePTT relationship table
$Author$
$LastChangedDate$
$LastChangedRevision$
- PROTEINGENETEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINGI - Variable in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- PROTEINGI - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- PROTEINGO - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINGOTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinhasProteinKeyword - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This class is the Protein_has_ProteinKeyword entity
- ProteinhasProteinKeyword() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- ProteinhasProteinKeyword(ProteinhasProteinKeywordPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- ProteinhasProteinKeyword(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- proteinhasProteinKeywordPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- ProteinhasProteinKeywordPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This class is the ProteinhasProteinKeyword PK
- ProteinhasProteinKeywordPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- ProteinhasProteinKeywordPK(long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- ProteinIntAct - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Intact entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIntAct() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- ProteinIntAct(ProteinIntActPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- ProteinIntAct(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- PROTEININTACT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinIntActPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- ProteinIntActPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinIntActPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIntActPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- ProteinIntActPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- PROTEININTACTTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinIsoformId - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Isoform Id entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformId() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- ProteinIsoformId(ProteinIsoformIdPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- ProteinIsoformId(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- PROTEINISOFORMID - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinIsoformIdPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- ProteinIsoformIdPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinIsoformIdPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformIdPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- ProteinIsoformIdPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- ProteinIsoformName - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Isoform Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformName() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- ProteinIsoformName(ProteinIsoformNamePK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- ProteinIsoformName(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- PROTEINISOFORMNAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinIsoformNamePK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- ProteinIsoformNamePK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinIsoformNamePK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinIsoformNamePK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- ProteinIsoformNamePK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- ProteinJpaController - Class in org.jbiowh.core.datasets.protein.jpa.controller
-
This class is the Protein Jpa Controller
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- ProteinJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.controller.ProteinJpaController
-
- ProteinKEGG - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein KEGG entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinKEGG() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- ProteinKEGG(ProteinKEGGPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- ProteinKEGG(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- PROTEINKEGG - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinKEGGEnzymeLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_KEGGEnzyme relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- proteinKEGGPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- ProteinKEGGPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinKEGGPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinKEGGPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- ProteinKEGGPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- PROTEINKEGGTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinKeyword - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Keyword entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinKeyword() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- ProteinKeyword(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- PROTEINKEYWORD - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinKeywordJpaController - Class in org.jbiowh.core.datasets.protein.jpa.controller
-
This class is the ProteinKeyword Jpa Controller
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinKeywordJpaController(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.controller.ProteinKeywordJpaController
-
- ProteinLinks - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create all Protein external relationship tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinLinks() - Constructor for class org.jbiowh.core.datasets.protein.parser.links.ProteinLinks
-
- ProteinListView - Class in org.jbiowh.gui.datasets.protein
-
This Class shows the Protein List
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinListView(Collection<Protein>, JComponent) - Constructor for class org.jbiowh.gui.datasets.protein.ProteinListView
-
Create the Protein List object
- ProteinLongName - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Long Name
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinLongName() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- ProteinLongName(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- ProteinLongName(Long, long, String, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- PROTEINLONGNAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinMINT - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein MINT entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinMINT() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- ProteinMINT(ProteinMINTPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- ProteinMINT(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- PROTEINMINT - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinMINTPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- ProteinMINTPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinMINTPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinMINTPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- ProteinMINTPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- PROTEINMINTTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinName - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Name entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinName() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinName(ProteinNamePK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinName(ProteinNamePK, int) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinName(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- PROTEINNAME - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinNamePK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- ProteinNamePK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinNamePK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinNamePK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- ProteinNamePK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- ProteinOntologyLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_Ontology relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinOtherLocation - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein Other Location entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinOtherLocation() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- ProteinOtherLocation(Long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- ProteinOtherLocation(Long, long, long) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- PROTEINOTHERLOCATION - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinParser - Class in org.jbiowh.core.datasets.protein.parser
-
This Class is the Protein Parser
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinParser() - Constructor for class org.jbiowh.core.datasets.protein.parser.ProteinParser
-
- ProteinPDB - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is Protein PDB entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPDB() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- ProteinPDB(ProteinPDBPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- ProteinPDB(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- PROTEINPDB - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinPDBPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- ProteinPDBPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinPDBPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPDBPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- ProteinPDBPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- PROTEINPDBTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinPFAM - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein PFAM entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPFAM() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- ProteinPFAM(ProteinPFAMPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- ProteinPFAM(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- PROTEINPFAM - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinPFAMPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- ProteinPFAMPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinPFAMPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPFAMPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- ProteinPFAMPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- PROTEINPFAMTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinPMID - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the Protein PMID entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPMID() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- ProteinPMID(ProteinPMIDPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- ProteinPMID(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- PROTEINPMID - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinPMIDPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- ProteinPMIDPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinPMIDPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinPMIDPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- ProteinPMIDPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- PROTEINPMIDTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinRefSeq - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinRefSeq entity
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinRefSeq() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- ProteinRefSeq(ProteinRefSeqPK) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- ProteinRefSeq(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- PROTEINREFSEQ - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- proteinRefSeqPK - Variable in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- ProteinRefSeqPK - Class in org.jbiowh.core.datasets.protein.jpa.entities
-
This Class is the ProteinRefSeqPK
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinRefSeqPK() - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- ProteinRefSeqPK(long, String) - Constructor for class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- PROTEINREFSEQTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- PROTEINSEQUENCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ProteinSequencesTags
-
- PROTEINSEQUENCES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.ProteinSequencesTags
-
- ProteinSequencesTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the ProteinSequences XMl Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinTables - Class in org.jbiowh.core.datasets.protein.parser
-
This Class is the Protein tables
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- PROTEINTAXID - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProteinTaxonomyLink - Class in org.jbiowh.core.datasets.protein.parser.links
-
This Class create the Protein_has_Taxonomy relationship table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- ProteinToFasta - Class in org.jbiowh.core.datasets.protein.utils
-
This class is used to print Proteins sequences in fasta format
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $ $LastChangedRevision: 396 $
- ProteinToFasta(PrintWriter) - Constructor for class org.jbiowh.core.datasets.protein.utils.ProteinToFasta
-
Create a ProteinToFasta object
- ProteinTransfer - Class in org.jbiowh.core.datasets.protein.jpa.transfer
-
This class handled the Protein transfer process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- ProteinTransfer(EntityManagerFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.transfer.ProteinTransfer
-
Create the Protein transfer
- ProteinTransfer(WHDBMSFactory) - Constructor for class org.jbiowh.core.datasets.protein.jpa.transfer.ProteinTransfer
-
Create the Protein transfer
- ProteinType - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the ProteinType on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ProteinType() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
This constructor initialize the WH file manager and the WH DataSet
manager
- ProteinTypeTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Tags for ProteinType
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- ProteinTypeTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.ProteinTypeTags
-
- ProteinUtils - Class in org.jbiowh.core.datasets.protein.utils
-
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-10-15 09:23:43 +0200 (Mon, 15 Oct 2012) $ $LastChangedRevision: 285 $
- PROTEINWIDKEYWORDTEMP - Variable in class org.jbiowh.core.datasets.protein.parser.ProteinTables
-
- ProtFamDataSetView - Class in org.jbiowh.gui.datasets.protfam
-
This Class handled the ProtFam View
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- ProtFamDataSetView(JComponent, Object) - Constructor for class org.jbiowh.gui.datasets.protfam.ProtFamDataSetView
-
Creates new form AbstractDataSetView
- PTO - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- PTTFILE - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- put(String, SQLTableColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Maps the specified key to the specified SQLTableColumn column in this
table.
- put(String, SQLTableIndexColumn) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Maps the specified key to the specified SQLTableIndexColumn index in this
table.
- put(String, SQLTableIndex) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Maps the specified key to the specified SQLTableIndex column in this
table.
- SA - Variable in class org.jbiowh.core.datasets.disease.omim.parser.files.tags.OMIMTabs
-
- save() - Method in class org.jbiowh.gui.save.SaveToFile
-
- SaveActionListener - Class in org.jbiowh.gui.actions.jbiowh
-
This class launch the save action on the main window
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SaveActionListener(JBioWH) - Constructor for class org.jbiowh.gui.actions.jbiowh.SaveActionListener
-
Launch the save action on the main window
- SavedResults - Class in org.jbiowh.core.utility.utils
-
This Class is storage the previously saved results
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SaveToFile - Class in org.jbiowh.gui.save
-
This Class is save a result to a file
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SaveToFile(Component) - Constructor for class org.jbiowh.gui.save.SaveToFile
-
Creates a SaveToFile object to save the objects inside the component
- SaveToFile(Component, Object) - Constructor for class org.jbiowh.gui.save.SaveToFile
-
Creates a SaveToFile object to save the objects inside the component
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.protein.search.SearchProtein
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- search(String, JPLConstrains) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Perform the search
- search(List, JPLConstrains) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Perform the search
- searchByWID(long, Class) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Search Entity by WID
- searchByWID(List, Class) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Search Entity from a WID list
- SearchDrugBank - Class in org.jbiowh.core.datasets.drug.drugbank.search
-
This class perform the search over the DrugBank module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-27 14:55:04 +0100 (Tue, 27 Nov 2012) $
$LastChangedRevision: 345 $
- SearchDrugBank() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
Creates the DrugBank search object
- SearchFactory - Class in org.jbiowh.core.utility.utils
-
This Class is the abstract search factory
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchFactory() - Constructor for class org.jbiowh.core.utility.utils.SearchFactory
-
- SearchGeneInfo - Class in org.jbiowh.core.datasets.gene.search
-
This Class perform the search over the Gene module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-09-25 00:06:19 +0200
(Tue, 25 Sep 2012) $ $LastChangedRevision: 396 $
- SearchGeneInfo() - Constructor for class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
Create the Gene search object
- SearchGenePTT - Class in org.jbiowh.core.datasets.gene.search
-
This Class perform the search over the GenePTT module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-11-08 14:37:19 +0100
(Thu, 08 Nov 2012) $ $LastChangedRevision: 396 $
- SearchGenePTT() - Constructor for class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
Creates the GenePTT search object
- SearchKEGGCompound - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGCompound module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGCompound() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGCompound
-
- SearchKEGGEnzyme - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGEnzyme module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGEnzyme() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-
- SearchKEGGGene - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGGene module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SearchKEGGGene() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGene
-
- SearchKEGGGlycan - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGGlycan module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGGlycan() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGGlycan
-
- SearchKEGGPathway - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This class perform the search over the KEGGPathway module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SearchKEGGPathway() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGPathway
-
- SearchKEGGReaction - Class in org.jbiowh.core.datasets.pathway.kegg.search
-
This Class perform the search over the KEGGReaction module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SearchKEGGReaction() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGReaction
-
- SearchOMIM - Class in org.jbiowh.core.datasets.disease.omim.search
-
This Class perform the search over the OMIM module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SearchOMIM() - Constructor for class org.jbiowh.core.datasets.disease.omim.search.SearchOMIM
-
- SearchOntology - Class in org.jbiowh.core.datasets.ontology.search
-
This Class perform the search over the Ontology module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SearchOntology() - Constructor for class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
This Class perform the search over the Ontology module
- SearchPanel - Class in org.jbiowh.gui.component.panel
-
This JPanel is the Search interface
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-04 11:38:29 +0100
(Tue, 04 Dec 2012) $ $LastChangedRevision: 396 $
- SearchPanel(JComponent) - Constructor for class org.jbiowh.gui.component.panel.SearchPanel
-
Creates new form SearchPanel
- SearchPFam - Class in org.jbiowh.core.datasets.domain.pfam.search
-
This class perform the search over the PFam module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-12-27 15:38:46 +0100 (Thu, 27 Dec 2012) $
$LastChangedRevision: 377 $
- SearchPFam() - Constructor for class org.jbiowh.core.datasets.domain.pfam.search.SearchPFam
-
- SearchProtein - Class in org.jbiowh.core.datasets.protein.search
-
This Class perform the search over the Protein module
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-12-27 15:38:46 +0100
(Thu, 27 Dec 2012) $ $LastChangedRevision: 396 $
- SearchProtein() - Constructor for class org.jbiowh.core.datasets.protein.search.SearchProtein
-
This Class perform the search over the Protein module
- SearchTaxonomy - Class in org.jbiowh.core.datasets.taxonomy.search
-
This Class perform the search over the Taxonomy module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SearchTaxonomy() - Constructor for class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
This Class perform the search over the Taxonomy module
- SearchUniRef - Class in org.jbiowh.core.datasets.protclust.search
-
This Class perform the search over the UniRef module
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SearchUniRef() - Constructor for class org.jbiowh.core.datasets.protclust.search.SearchUniRef
-
This Class perform the search over the UniRef module
- SECONDARYACCESSIONNUMBER - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SecondaryAccessionNumbersTags
-
- SECONDARYACCESSIONNUMBERS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SecondaryAccessionNumbersTags
-
- SecondaryAccessionNumbersTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the SecondaryAccessionNumbers XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- selectAll() - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- selectCell(String) - Method in class org.jbiowh.gui.component.graph.EntityRelationshipDialog
-
- Sequence - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML Sequence Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- Sequence() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
This constructor initialize the WH file manager and the WH DataSet
manager
- SequenceTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML Sequence Tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SequenceTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.SequenceTags
-
- SequenceTypeTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the SequenceType XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SequenceTypeTags() - Constructor for class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SequenceTypeTags
-
- setAbbreviation(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setAbsorption(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setAbstract1(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setAcc(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setAccessionNumber(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setAccessionNumber(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setAffectedOrganisms(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setAHFSCodes(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setAI(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as AI
- setAlias(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setAliEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setAliEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setAliStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setAliStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setAlt(Alt) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Sets the value of the alt property.
- setAlt(Alt) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Sets the value of the alt property.
- setAltId(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- setApplication(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's application name
- setApplicationVersion(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's application version
- setApproved(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setArchitecture(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setArchitectureAcc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setAsMainSchema(String, boolean) - Method in class org.jbiowh.core.dbms.WHDBMS
-
Set the URL as main schema
- setAssembly(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setATCCode(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setAttribType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- setAttribute(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setAttribValue(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- setAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setAutoPfamseq(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- setAutoPfamseq(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- setAv(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setAvailability(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- setAvailabilityRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setAverageCoverage(Double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setAverageLength(Double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setBackground(Color) - Method in class org.jbiowh.gui.component.tree.TreeSchemaRenderer
-
- setBase(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setBeginIntervalBegin(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setBeginIntervalEnd(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setBeginPos(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setBeginPosition(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setBeginStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setbGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setBGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setBgcolor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the bgcolor property.
- setBiotransformation(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setBondEnd(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setBondStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setBrand(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setBuildMethod(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setcASNumber(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCASNumber(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCategory(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- setCd(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- setCellEditable(boolean, int, int) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the editable field for the cell
- setCellEditable(boolean, int[], int[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the editable field for the cell
- setChain(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setChain(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setChain(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setChangeDate(Date) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's change date
- setChangeStatus(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setChecksum(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setChecksum(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setChromosome(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setCigar(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setCigar(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setCigar(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setCite(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setCitId(int) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setCitKey(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setClanAcc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanAuthor(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanDescription(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClanId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setClass1(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setClass1(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- setClass1(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- setClearance(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCn(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- setCode(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setCode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setCode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setCog(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setCollection(Collection<T>) - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Set the collection
- setColumnNames(String[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the column's name
- setColumns(SQLTableColumns) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's columns
- setColumns(ConcurrentHashMap<String, SQLTableIndexColumn>) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's columns
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setComment(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setComment(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setComment(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setComment(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setComments(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setCompeted(Boolean) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setComponent(Boolean) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setComposition(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setConn(Connection) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL connection
- setConn(Connection) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL connection
- setConstrains(List) - Method in class org.jbiowh.core.utility.constrains.JPLConstrains
-
Set the constrains
- setConstrains(JPLConstrains) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- setContents(List<List<Object>>) - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
Set the data object
- setCoord(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setCoords(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the coords property.
- setCost(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setCount(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setCountry(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setCreated(Date) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setCs(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setCurrency(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setCurrent(int) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Set the index position to the index
- setCurrent(GenePTT) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Set the current gene to the GenePTT (gene) object
- setCytogLoc(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setCytogLog(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setData(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setData(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setData(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setData(List) - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Set the data list
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setDataset(DataSet) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the DataSet object loaded
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDataSet(DataSet) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setDataSetIn(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setDataSetWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setDate(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setDay(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setDb(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setdBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setDBAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setDbId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setDbId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setDbLink(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setDbLink(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setDBName(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- setDBName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setDef(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setDef(Object) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's default value
- setDefinition(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setDefinition(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setDepositedBy(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDepositedBy(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setDescription(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setDirectory(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the data source directory
- setDisease(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setDisorder(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setDisplayed(List) - Method in class org.jbiowh.gui.component.table.model.data.ExtendedModelData
-
Set the displayed list
- setDivision(TaxonomyDivision) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setDomain(Boolean) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setDomainBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setDomainBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setDomainBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setDomainEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setDomainEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainGA(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDomainNC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDomainOder(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainOrder(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setDomainScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setDomainTC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setDriver(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL JAVA driver
- setDriver(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL JAVA driver
- setDroptables(boolean) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the drop tables parameter
- setDrug(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBank(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setDrugBank(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setDrugBank(DrugBank) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDrugBank(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankAffectedOrganisms(Set<DrugBankAffectedOrganisms>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankAHFSCodes(Set<DrugBankAHFSCodes>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankAsCarriers(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankAsEnzyme(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankAsTransporters(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setDrugBankATCCodes(Set<DrugBankATCCodes>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankBrands(Set<DrugBankBrands>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankCalculatedProperties(Set<DrugBankCalculatedProperties>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankCarriers(Set<DrugBankCarriers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankCarriers(DrugBankCarriers) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setDrugBankCarriers(DrugBankCarriers) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setDrugBankCarriersActions(Set<DrugBankCarriersActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBankCarriersRef(Set<DrugBankCarriersRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBankCarriersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setDrugBankCarriersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setDrugBankCategories(Set<DrugBankCategories>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankDosages(Set<DrugBankDosages>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankDrugInteractions(Map<DrugBankDrugInteractionsPK, DrugBankDrugInteractions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankDrugInteractionsPK(DrugBankDrugInteractionsPK) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractions
-
- setDrugBankEnzymes(Set<DrugBankEnzymes>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankEnzymes(DrugBankEnzymes) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setDrugBankEnzymes(DrugBankEnzymes) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setDrugBankEnzymesActions(Set<DrugBankEnzymesActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBankEnzymesRef(Set<DrugBankEnzymesRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBankEnzymesWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setDrugBankEnzymesWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setDrugBankExperimentalProperties(Set<DrugBankExperimentalProperties>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankExternalIdentifiers(Set<DrugBankExternalIdentifiers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankExternalLinks(Set<DrugBankExternalLinks>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankFoodInteractions(Set<DrugBankFoodInteractions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankGeneralRef(Set<DrugBankGeneralRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankGroup(Set<DrugBankGroup>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankManufacturers(Set<DrugBankManufacturers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankMixtures(Set<DrugBankMixtures>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankPackagers(Set<DrugBankPackagers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankPatents(Set<DrugBankPatents>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankPrices(Set<DrugBankPrices>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankProteinSequences(Set<DrugBankProteinSequences>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBanks(Set<DrugBank>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setDrugBankSecondAccessionNumbers(Set<DrugBankSecondAccessionNumbers>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankSynonyms(Set<DrugBankSynonyms>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTargets(Set<DrugBankTargets>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTargets(DrugBankTargets) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setDrugBankTargets(DrugBankTargets) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setDrugBankTargetsActions(Set<DrugBankTargetsActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBankTargetsRef(Set<DrugBankTargetsRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBankTargetsWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setDrugBankTargetsWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setDrugBankTaxonomy(Set<DrugBankTaxonomy>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTaxonomySubstructures(Set<DrugBankTaxonomySubstructures>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTransporters(Set<DrugBankTransporters>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setDrugBankTransporters(DrugBankTransporters) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setDrugBankTransporters(DrugBankTransporters) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setDrugBankTransportersActions(Set<DrugBankTransportersActions>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDrugBankTransportersRef(Set<DrugBankTransportersRef>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDrugBankTransportersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setDrugBankTransportersWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDrugInteractionsPK
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setDrugBankWID(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setDsspCode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setEd(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- setEdit(boolean[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the default edit array for each column
- setEditCell(List<List<Boolean>>) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the edit matrix for all the cells
- setElement(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- seteMBLCode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setEndFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndIntervalBegin(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndIntervalEnd(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndPos(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setEndPosition(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndPositionOnTheGenomicAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setEndShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setEndStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setEngine(String) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's engine
- setEnsemblGeneIdentifier(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setEnsemblProteinIdentifier(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setEnsemblRNAIdentifier(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setEntries(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setEntry(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setEntry1(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Sets the value of the entry1 property.
- setEntry2(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Sets the value of the entry2 property.
- setEquation(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setError(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setEventType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setEvidence(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setExistence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setExperimentRef(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- setExperimentRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setExperiments(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setExpires(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setExponent(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setFactor(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setfGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setFGColor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setFgcolor(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the fgcolor property.
- setFields(HashMap<String, Class>) - Method in class org.jbiowh.core.utility.utils.SearchFactory
-
Set the available search fields
- setFill(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- setFoodInteractions(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setForm(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setFormula(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setForwardLambda(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setForwardTau(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setFragment(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setFragment(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setFullConsensus(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setFullNameFromNomenclatureAuthority(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGencode(TaxonomyGenCode) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setGenCodeId(int) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setGene2Accession(Map<Gene2AccessionPK, Gene2Accession>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGene2AccessionPK(Gene2AccessionPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setGene2Ensembl(Set<Gene2Ensembl>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGene2PMID(Map<Gene2PMIDPK, Gene2PMID>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGene2PMIDPK(Gene2PMIDPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- setGene2STS(Map<Gene2STSPK, Gene2STS>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGene2STSPK(Gene2STSPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- setGene2UniGene(Map<Gene2UniGenePK, Gene2UniGene>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGene2UniGenePK(Gene2UniGenePK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- setGeneGroup(Map<GeneGroupPK, GeneGroup>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGeneGroupPK(GeneGroupPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- setGeneId(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setGeneID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMID
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STS
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGene
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroup
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- setGeneInfo(GeneInfo) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setGeneInfo(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setGeneInfoDBXrefs(Map<GeneInfoDBXrefsPK, GeneInfoDBXrefs>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGeneInfoDBXrefsPK(GeneInfoDBXrefsPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefs
-
- setGeneInfos(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setGeneInfos(Set<GeneInfo>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setGeneInfoSynonyms(Map<GeneInfoSynonymsPK, GeneInfoSynonyms>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGeneInfoSynonymsPK(GeneInfoSynonymsPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonyms
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- setGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- setGeneLocusTag(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setGenePTT(GenePTT) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setGenePTT(GenePTT) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setGenePTTs(List<GenePTT>) - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Set the list of genes on the chromosome.
- setGeneRefSeqUniprotPK(GeneRefSeqUniprotPK) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprot
-
- setGeneric(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setGeneStatus(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setGeneSymbol(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setGenomicNucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setGenomicNucleotideAccessionVersion(Integer) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setGenomicNucleotideGi(BigInteger) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setGrouping(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setGroupName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setHalfLife(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setHeader(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setHeight(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setHeight(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the height property.
- setHexColour(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setHomeURL(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's Home URL
- setId(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setId(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoDBXrefsPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setId(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- setId(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setId(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Component
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Sets the value of the id property.
- setId(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Sets the value of the id property.
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setId(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setId(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setId(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setId(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setId(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- setId(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- setId(int) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setId1(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setId2(int) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setIdentifier(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setImage(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setImage(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the image property.
- setImexId(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setIndexes(SQLTableIndexes) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's indexes
- setIndexName(String) - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
Set the active index's name showed on the Index Column table
- setIndication(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setInFull(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setInFull(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setIngredients(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setInheritedDivision(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setInheritedGencode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setInheritedMCGencode(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setIntactID(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setInteractionRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setInteractorRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setInteractorRef(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setInterproId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setIntraMolecular(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setIsAOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- setIsAOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- setIsLink(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setIsObsolete(boolean) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setIsRepresentative(Boolean) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setItem(Object) - Method in class org.jbiowh.gui.sqltables.listener.DataTypeComboBoxEditor
-
- setJbiowhSchema(boolean) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
- setJbiowhSchema(boolean) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set to true if this connection belongs to a JBioWH default schema
- setJournal(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setjTViewColumn(List<List<Object>>, int) - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Set the Link Table format
- setkEGGCompound(KEGGCompound) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- setkEGGCompound(KEGGCompound) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setkEGGCompound(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setkEGGCompoundAsCofactor(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGCompoundAsEffector(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGCompoundAsInhibitor(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGCompoundAsProduct(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGCompoundAsSubstrate(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGCompoundDBLink(Map<KEGGCompoundDBLinkPK, KEGGCompoundDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setKEGGCompoundDBLinkPK(KEGGCompoundDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLink
-
- setkEGGCompoundName(Set<KEGGCompoundName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGCompounds(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setkEGGCompounds(Set<KEGGCompound>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setKEGGCompoundWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundDBLinkPK
-
- setkEGGCompoundWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setKEGGCompoundWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- setkEGGEnzyme(KEGGEnzyme) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setkEGGEnzyme(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGEnzymeAsCofactor(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGEnzymeAsEffector(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGEnzymeAsInhibitor(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGEnzymeClass(Set<KEGGEnzymeClass>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGEnzymeDBLink(Map<KEGGEnzymeDBLinkPK, KEGGEnzymeDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setKEGGEnzymeDBLinkPK(KEGGEnzymeDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLink
-
- setkEGGEnzymeName(Set<KEGGEnzymeName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGEnzymeOrthology(Map<KEGGEnzymeOrthologyPK, KEGGEnzymeOrthology>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setKEGGEnzymeOrthologyPK(KEGGEnzymeOrthologyPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- setkEGGEnzymes(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGEnzymes(Set<KEGGEnzyme>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setkEGGEnzymeSysName(Set<KEGGEnzymeSysName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeDBLinkPK
-
- setkEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthologyPK
-
- setkEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setKEGGEnzymeWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setkEGGGene(KEGGGene) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- setkEGGGeneDBLink(Map<KEGGGeneDBLinkPK, KEGGGeneDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setKegggenedblinkPK(KEGGGeneDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- setKEGGGeneDBLinkPK(KEGGGeneDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLink
-
- setkEGGGeneDisease(Set<KEGGGeneDisease>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setkEGGGeneDrugTarget(Map<KEGGGeneDrugTargetPK, KEGGGeneDrugTarget>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setKEGGGeneDrugTargetPK(KEGGGeneDrugTargetPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTarget
-
- setkEGGGeneName(Set<KEGGGeneName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setkEGGGeneOrthology(Map<KEGGGeneOrthologyPK, KEGGGeneOrthology>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setKEGGGeneOrthologyPK(KEGGGeneOrthologyPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- setkEGGGenes(Set<KEGGGene>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setkEGGGenes(Set<KEGGGene>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDBLinkPK
-
- setkEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- setkEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setKEGGGeneWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthologyPK
-
- setkEGGGlycan(KEGGGlycan) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- setkEGGGlycan(KEGGGlycan) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setkEGGGlycanAsProduct(Set<KEGGGlycan>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGGlycanAsSubstrate(Set<KEGGGlycan>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGGlycanClass(Set<KEGGGlycanClass>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setkEGGGlycanDBLink(Map<KEGGGlycanDBLinkPK, KEGGGlycanDBLink>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setKeggglycandblinkPK(KEGGGlycanDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- setKEGGGlycanDBLinkPK(KEGGGlycanDBLinkPK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLink
-
- setkEGGGlycanName(Set<KEGGGlycanName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setKEGGGlycanWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanDBLinkPK
-
- setkEGGGlycanWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setKEGGGlycanWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setkEGGPathway(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setkEGGPathway(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setkEGGPathway(KEGGPathway) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setkEGGPathwayEntry(Set<KEGGPathwayEntry>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGPathwayEntry(KEGGPathwayEntry) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setkEGGPathwayEntryGraphic(Set<KEGGPathwayEntryGraphic>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setkEGGPathwayEntryWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setKEGGPathwayEntryWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setkEGGPathwayReaction(Set<KEGGPathwayReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGPathwayRelation(Set<KEGGPathwayRelation>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGPathwayRelation(KEGGPathwayRelation) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- setkEGGPathwayRelationSubType(Map<KEGGPathwayRelationSubTypePK, KEGGPathwayRelationSubType>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setKeggpathwayrelationsubtypePK(KEGGPathwayRelationSubTypePK) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubType
-
- setKEGGPathwayRelationWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGPathways(Set<KEGGPathway>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setkEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setKEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setkEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setKEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setkEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setKEGGPathwayWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setkEGGReaction(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setkEGGReaction(KEGGReaction) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setkEGGReactionAsProduct(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGReactionAsProduct(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setkEGGReactionAsSubstrate(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setkEGGReactionAsSubstrate(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setkEGGReactionName(Set<KEGGReactionName>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setkEGGReactions(Set<KEGGReaction>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setkEGGReactionWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setKEGGReactionWID(long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setkEGGRPair(Set<KEGGRPair>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setKeyword(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setKeywords(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setKind(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setKind(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setKingdom(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setKnownAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setLabel(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- setLabel(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setLength(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setLength(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's length
- setLevel(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setLevel(int) - Method in class org.jbiowh.core.logger.VerbLogger
-
Set the information level to print the messages
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the link property.
- setLink(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the link property.
- setLoadDate(Date) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's load date
- setLoadedBy(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's load user
- setLocation(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setLocationType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setLocusTag(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setManufacturer(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setMapLocation(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setMass(Float) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setMass(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setMass(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setMass(Float) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setMass(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setMcgencode(TaxonomyGenCode) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setMechanismOfAction(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setMethod(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- setMethod(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setMethod(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifBioSourceTypeCellType(Set<MIFBioSourceTypeCellType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifBioSourceTypeCellType(MIFBioSourceTypeCellType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifBioSourceTypeCompartment(Set<MIFBioSourceTypeCompartment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifBioSourceTypeCompartment(MIFBioSourceTypeCompartment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifBioSourceTypeTissue(MIFBioSourceTypeTissue) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifBioSourceTypeTissueD(Set<MIFBioSourceTypeTissue>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifEntryExperiment(Set<MIFEntryExperiment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifEntryExperiment(Set<MIFEntryExperiment>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifEntryExperiment(MIFEntryExperiment) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setmIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setmIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setmIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMIFEntryExperimentWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifEntryInteraction(Set<MIFEntryInteraction>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifEntryInteraction(MIFEntryInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setmIFEntryInteraction(Set<MIFEntryInteraction>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setmIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setmIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setmIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMIFEntryInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifEntryInteractor(Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntryInteractor(Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifEntryInteractor(MIFEntryInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifEntryInteractor(Set<MIFEntryInteractor>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setmIFEntryInteractorWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMIFEntryInteractorWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setmIFEntrySet(MIFEntrySet) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setmIFEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFEntrySetEntry(Set<MIFEntrySetEntry>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setmIFEntrySetEntry(MIFEntrySetEntry) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMIFEntrySetEntryWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setmIFEntrySetWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntrySource(Set<MIFEntrySource>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifEntrySource(MIFEntrySource) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentFeatDetecMethod(Set<MIFExperimentFeatDetecMethod>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifExperimentFeatDetecMethod(MIFExperimentFeatDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifExperimentInterDetecMethod(Set<MIFExperimentInterDetecMethod>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifExperimentInterDetecMethod(MIFExperimentInterDetecMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifExperimentPartIdentMethod(Set<MIFExperimentPartIdentMethod>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifExperimentPartIdentMethod(MIFExperimentPartIdentMethod) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifFeatureFeatDetMeth(MIFFeatureFeatDetMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifFeatureFeatDetMeth(Set<MIFFeatureFeatDetMeth>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifFeatureFeatureRange(Set<MIFFeatureFeatureRange>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifFeatureFeatureType(MIFFeatureFeatureType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifFeatureFeatureType(Set<MIFFeatureFeatureType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifInferredInteractionParticipant(Map<MIFInferredInteractionParticipantPK, MIFInferredInteractionParticipant>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMIFInferredInteractionParticipantPK(MIFInferredInteractionParticipantPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setmIFInferredInteractionParticipantPK(MIFInferredInteractionParticipantPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setMifInteractionInferredInteraction(Set<MIFInteractionInferredInteraction>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifInteractionInferredInteraction(MIFInteractionInferredInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setMifInteractionInferredInteraction(MIFInteractionInferredInteraction) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMIFInteractionInferredInteractionWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- setMifInteractionInteractionType(Set<MIFInteractionInteractionType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifInteractionInteractionType(MIFInteractionInteractionType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifInteractionParticipant(Set<MIFInteractionParticipant>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setMifInteractionParticipant(MIFInteractionParticipant) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- setmIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMIFInteractionParticipantWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifInteractorInteractorType(Set<MIFInteractorInteractorType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifInteractorInteractorType(MIFInteractorInteractorType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherAlias(Set<MIFOtherAlias>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherAttribute(Set<MIFOtherAttribute>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherAvailability(Map<MIFOtherAvailabilityPK, MIFOtherAvailability>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setmIFOtherAvailabilityPK(MIFOtherAvailabilityPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setMIFOtherAvailabilityPK(MIFOtherAvailabilityPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailability
-
- setMifOtherBibRef(Set<MIFOtherBibRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setmIFOtherBibRef(Set<MIFOtherBibRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherBibref(MIFOtherBibRef) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherBibref(MIFOtherBibRef) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherBioSourceType(Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherBioSourceType(Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherBioSourceType(Set<MIFOtherBioSourceType>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherBioSourceType(MIFOtherBioSourceType) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setmIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setmIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setmIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMIFOtherBioSourceTypeWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherConfidence(Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherConfidence(Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherConfidence(Set<MIFOtherConfidence>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifOtherConfidence(MIFOtherConfidence) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setmIFOtherExperimentRefPK(MIFOtherExperimentRefPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMIFOtherExperimentRefPK(MIFOtherExperimentRefPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAvailabilityPK
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRefPK
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setmIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMIFOtherWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifOtherWIDExperimentRef(Map<MIFOtherExperimentRefPK, MIFOtherExperimentRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setmIFOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRef(MIFOtherXRef) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRef(Set<MIFOtherXRef>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefGO(MIFOtherXRefGO) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefGO(Set<MIFOtherXRefGO>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefPubMed(MIFOtherXRefPubMed) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefPubMed(Set<MIFOtherXRefPubMed>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefRefSeq(MIFOtherXRefRefSeq) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefRefSeq(Set<MIFOtherXRefRefSeq>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setMifOtherXRefUniprot(MIFOtherXRefUniprot) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setMifOtherXRefUniprot(Set<MIFOtherXRefUniprot>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setMifParticipantBiologicalRole(Set<MIFParticipantBiologicalRole>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantBiologicalRole(MIFParticipantBiologicalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifParticipantExperimentalInteractor(MIFParticipantExperimentalInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setMifParticipantExperimentalInteractor(MIFParticipantExperimentalInteractor) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantExperimentalPreparation(Set<MIFParticipantExperimentalPreparation>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantExperimentalPreparation(MIFParticipantExperimentalPreparation) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifParticipantExperimentalRole(Set<MIFParticipantExperimentalRole>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantExperimentalRole(MIFParticipantExperimentalRole) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifParticipantFeature(Set<MIFParticipantFeature>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantFeature(MIFParticipantFeature) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setmIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setMIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setmIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setMIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setmIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMIFParticipantFeatureWID(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setMifParticipantParameter(Map<MIFParticipantParameterPK, MIFParticipantParameter>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setMifParticipantParameter(Map<MIFParticipantParameterPK, MIFParticipantParameter>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMIFParticipantParameterPK(MIFParticipantParameterPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setmIFParticipantParameterPK(MIFParticipantParameterPK) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setMifParticipantPartIdentMeth(Set<MIFParticipantPartIdentMeth>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherExperimentRef
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setMifParticipantPartIdentMeth(MIFParticipantPartIdentMeth) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setMIMNumber(BigInteger) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setMIMNumber(BigInteger) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setMinorVersion(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setModelEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setModelEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setModelEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setModelled(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setModelLength(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setModelStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setModelStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setModelStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setModificationDate(Date) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setModified(Date) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setModified(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setMolecule(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setMonth(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setMouseCorr(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setMsvLambda(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setMsvMu(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setName(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setName(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's name
- setName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- setName(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeOrthology
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDrugTargetPK
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneOrthology
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Alt
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Product
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Sets the value of the name property.
- setName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setName(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setName(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- setName(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setName(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTable
-
Set the table's name
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's name
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's name
- setName(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's name
- setNameAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setNameClass(TaxonomySynonymNameClass) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- setNameClass(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- setNameSpace(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setNegative(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setNN(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as NN
- setNomenclatureStatus(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setNoSeqs(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setNote(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setNoteEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setNumber(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setNumber(long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setNumber(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setNumber(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the number property.
- setNumber(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's number
- setNumber(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's number
- setNumber(int) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's number
- setNumberArchs(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberArchs(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberArchs(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumberMeta(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberNcbi(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberRegions(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberSequences(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumberShuffledHits(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberSpecies(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberSpecies(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberSpecies(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumberStructures(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumberStructures(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setNumberStructures(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setNumDistinctRegions(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setNumFull(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumProteins(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setNumSeed(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setNumTotalRegions(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setObserved(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- setOmim(OMIM) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- setOmim(Set<OMIM>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setOmimAVs(Set<OMIMAV>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMCDPK(OMIMCDPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCD
-
- setOmimCDs(Map<OMIMCDPK, OMIMCD>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMCNPK(OMIMCNPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCN
-
- setOmimCNs(Map<OMIMCNPK, OMIMCN>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimCS(OMIMCS) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setOmimCSDatas(Set<OMIMCSData>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setOmimCSs(Set<OMIMCS>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimcsWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setOMIMEDPK(OMIMEDPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMED
-
- setOmimEDs(Map<OMIMEDPK, OMIMED>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setoMIMGeneMaps(Set<OMIMGeneMap>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- setoMIMGeneMaps(Set<OMIMGeneMap>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setOmimId(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimId(BigInteger) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setoMIMMethods(Set<OMIMMethod>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setoMIMMorbidMaps(Set<OMIMMorbidMap>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setOmimRFs(Set<OMIMRF>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimSAs(Set<OMIMSA>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMTIPK(OMIMTIPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTI
-
- setOmimTIs(Map<OMIMTIPK, OMIMTI>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOMIMTXPK(OMIMTXPK) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- setOmimTXs(Map<OMIMTXPK, OMIMTX>) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCDPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCNPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMEDPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- setOmimWid(long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- setOntology(Set<Ontology>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- setOntology(Set<Ontology>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setOntologyAlternativeId(Map<OntologyAlternativeIdPK, OntologyAlternativeId>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyAlternativeIdPK(OntologyAlternativeIdPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeId
-
- setOntologyhasOntologySynonym(Map<OntologyhasOntologySynonymPK, OntologyhasOntologySynonym>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyhasOntologySynonym(Map<OntologyhasOntologySynonymPK, OntologyhasOntologySynonym>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- setOntologyhasOntologySynonymPK(OntologyhasOntologySynonymPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- setOntologyIsA(Map<OntologyIsAPK, OntologyIsA>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyIsAPK(OntologyIsAPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsA
-
- setOntologyPMID(Map<OntologyPMIDPK, OntologyPMID>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyPMIDPK(OntologyPMIDPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMID
-
- setOntologyRelation(Map<OntologyRelationPK, OntologyRelation>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyRelationPK(OntologyRelationPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setOntologySubset(Set<OntologySubset>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologySynonym(OntologySynonym) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonym
-
- setOntologySynonymWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- setOntologyToConsider(Map<OntologyToConsiderPK, OntologyToConsider>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOntologyToConsiderPK(OntologyToConsiderPK) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyAlternativeIdPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyIsAPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- setOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- setOntologyXRef(Set<OntologyXRef>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
Set the open value
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Location
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Reference
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setOpen(boolean) - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
- setOrder(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Set the column's order
- setOrderAdded(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- setOrderAdded(short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- setOrderNumber(int) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- setOrderNumber(int) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- setOrg(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setOrg(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the org property.
- setOrganismsDiffer(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setOrientation(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setOrientation(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setOriginal(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setOtherDesignations(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setOtherGeneInfoWID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- setOtherOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setOtherOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelationPK
-
- setOtherParams(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setOtherParams(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setOtherPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setOtherWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setOutput(PrintStream) - Method in class org.jbiowh.core.logger.VerbLogger
-
Set the PrintStream who will be used to print the messages
- setParentTaxId(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setParticipant(int) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipantPK
-
- setParticipantType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInferredInteractionParticipant
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setPartner(int) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setPasswd(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL DB password
- setPasswd(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL DB password
- setPdbEndIcode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPdbId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setPdbInsertCode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPdbRes(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPdbResEnd(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPdbResStart(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPdbSeqNumber(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPdbStartIcode(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPercentageId(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setPfamA(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setPfamA(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setPfamA(PfamAbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setPfamAacc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamADatabaseLinkses(Set<PfamADatabaseLinks>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAhasPfamLiteratureReferences(Map<PfamAhasPfamLiteratureReferencesPK, PfamAhasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAhasPfamLiteratureReferences(Map<PfamAhasPfamLiteratureReferencesPK, PfamAhasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setPfamAhasPfamLiteratureReferencesPK(PfamAhasPfamLiteratureReferencesPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setPfamAid(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAInsignificant(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setPfamANCBIRegs(Set<PfamANCBIReg>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamAPDBRegs(Set<PfamAPDBReg>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamArchitectures(Set<PfamArchitecture>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamArchitectures(Set<PfamArchitecture>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamARegFullInsignificant(PfamARegFullInsignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamARegFullInsignificants(Set<PfamARegFullInsignificant>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamARegFullSignificant(PfamARegFullSignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPfamARegFullSignificant(PfamARegFullSignificant) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamARegFullSignificants(Set<PfamARegFullSignificant>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamARegFullSignificantWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setPfamARegSeed(Map<PfamARegSeedPK, PfamARegSeed>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamARegSeedPK(PfamARegSeedPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setPfamASignificant(Set<PfamAbioWH>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setPfamAWID(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamInterpro
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setPfamAWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- setPfamB(PfamBbioWH) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setPfamBacc(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setPfamBid(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setPfamBRegs(Set<PfamBReg>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setPfamBWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setPfamClanDatabaseLinkses(Set<PfamClanDatabaseLinks>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamClans(PfamClans) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setPfamClans(PfamClans) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setPfamClanses(Set<PfamClans>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamClanses(Set<PfamClans>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setPfamClanshasPfamLiteratureReferences(Map<PfamClanshasPfamLiteratureReferencesPK, PfamClanshasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPfamClanshasPfamLiteratureReferences(Map<PfamClanshasPfamLiteratureReferencesPK, PfamClanshasPfamLiteratureReferences>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setPfamClanshasPfamLiteratureReferencesPK(PfamClanshasPfamLiteratureReferencesPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setPfamClansWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setPfamClansWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- setPfamCompleteProteomes(PfamCompleteProteomes) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setPfamCompleteProteomesWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegionsPK
-
- setPfamContextRegions(Set<PfamContextRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamInterpros(Set<PfamInterpro>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamLiteratureReferences(PfamLiteratureReferences) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferences
-
- setPfamLiteratureReferences(PfamLiteratureReferences) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferences
-
- setPfamLiteratureReferencesWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAhasPfamLiteratureReferencesPK
-
- setPfamLiteratureReferencesWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanshasPfamLiteratureReferencesPK
-
- setPfamNestedLocationses(Set<PfamNestedLocations>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamPDB(PfamPDB) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPfamPDBResidueDatas(Set<PfamPDBResidueData>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setPfamPDBWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPfamProteomeRegions(Map<PfamProteomeRegionsPK, PfamProteomeRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPfamProteomeRegions(Map<PfamProteomeRegionsPK, PfamProteomeRegions>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setPfamProteomeRegionsPK(PfamProteomeRegionsPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setPfamSeqhasProtein(PfamSeqhasProtein) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setPfamSeqhasProtein(PfamSeqhasProtein) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setPfamSeqhasProteinPK(PfamSeqhasProteinPK) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamSeqhasUniProtId(PfamSeqhasUniProtId) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProtein
-
- setPfamseqRes(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPfamseqSeqNumber(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setPFrom(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setPharmacology(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setPK(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as PK
- setPLength(int) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setPmid(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setPmid(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2PMIDPK
-
- setPmid(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyPMIDPK
-
- setPmid(Map<TaxonomyPMIDPK, TaxonomyPMID>) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setPmid(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setPosition(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setPositionEnd(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setPositionStart(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setPositionStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setPrecursor(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setPrecursor(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setPreviousId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setPreviousId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setPreviousWID(long) - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Set the WidTable's previous Id
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setPrimaryRef(Boolean) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setProduct(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setProtein(Set<Protein>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- setProtein(Protein) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- setProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- setProteinAccessionNumber(Map<ProteinAccessionNumberPK, ProteinAccessionNumber>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinAccessionNumberPK(ProteinAccessionNumberPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumber
-
- setProteinAccessionVersion(Integer) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setProteinAsCarriers(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinAsEnzyme(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinAsTransporters(Set<Protein>) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinBinding(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setProteinBioCyc(Map<ProteinBioCycPK, ProteinBioCyc>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinBioCycPK(ProteinBioCycPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCyc
-
- setProteinComment(Set<ProteinComment>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setProteinComment(ProteinComment) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setProteinCommentConflict(Map<ProteinCommentConflictPK, ProteinCommentConflict>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentConflictPK(ProteinCommentConflictPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setProteinCommentEvent(Map<ProteinCommentEventPK, ProteinCommentEvent>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentEventPK(ProteinCommentEventPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEvent
-
- setProteinCommentInteract(Set<ProteinCommentInteract>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentInteractPK(ProteinCommentInteractPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteract
-
- setProteinCommentIsoform(Set<ProteinCommentIsoform>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentIsoform(ProteinCommentIsoform) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- setProteinCommentIsoform(ProteinCommentIsoform) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- setProteinCommentIsoformWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformIdPK
-
- setProteinCommentIsoformWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformNamePK
-
- setProteinCommentLink(Map<ProteinCommentLinkPK, ProteinCommentLink>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentLinkPK(ProteinCommentLinkPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLink
-
- setProteinCommentSubCellularLocation(Set<ProteinCommentSubCellularLocation>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentEventPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- setProteinCommentWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setProteinDBReference(Set<ProteinDBReference>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinDBReference(ProteinDBReference) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- setProteinDBReferenceProperty(Map<ProteinDBReferencePropertyPK, ProteinDBReferenceProperty>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setProteinDBReferencePropertyPK(ProteinDBReferencePropertyPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferenceProperty
-
- setProteinDBReferenceWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReferencePropertyPK
-
- setProteinDIP(Map<ProteinDIPPK, ProteinDIP>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinDIPPK(ProteinDIPPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIP
-
- setProteinDrugBank(Map<ProteinDrugBankPK, ProteinDrugBank>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinDrugBankPK(ProteinDrugBankPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBank
-
- setProteinEC(Map<ProteinECPK, ProteinEC>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinECPK(ProteinECPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinEC
-
- setProteinFeature(Set<ProteinFeature>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinFeature(ProteinFeature) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setProteinFeatureVariation(Set<ProteinFeatureVariation>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setProteinFeatureWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setProteinGi(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setProteinGi(Long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setProteinhasProteinKeyword(Map<ProteinhasProteinKeywordPK, ProteinhasProteinKeyword>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinhasProteinKeyword(Map<ProteinhasProteinKeywordPK, ProteinhasProteinKeyword>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setProteinhasProteinKeywordPK(ProteinhasProteinKeywordPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setProteinInsignificant(Set<Protein>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setProteinIntAct(Map<ProteinIntActPK, ProteinIntAct>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinIntActPK(ProteinIntActPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntAct
-
- setProteinIsoformId(Map<ProteinIsoformIdPK, ProteinIsoformId>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinIsoformIdPK(ProteinIsoformIdPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformId
-
- setProteinIsoformName(Map<ProteinIsoformNamePK, ProteinIsoformName>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setProteinIsoformNamePK(ProteinIsoformNamePK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIsoformName
-
- setProteinKEGG(Map<ProteinKEGGPK, ProteinKEGG>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinKEGGPK(ProteinKEGGPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGG
-
- setProteinKeyword(ProteinKeyword) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeyword
-
- setProteinKeywordWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- setProteinLongName(Set<ProteinLongName>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinMINT(Map<ProteinMINTPK, ProteinMINT>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinMINTPK(ProteinMINTPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINT
-
- setProteinName(Map<ProteinNamePK, ProteinName>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinNameDef(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setProteinNamePK(ProteinNamePK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinName
-
- setProteinOtherLocation(Set<ProteinOtherLocation>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinPDB(Map<ProteinPDBPK, ProteinPDB>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinPDBPK(ProteinPDBPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDB
-
- setProteinPFAM(Map<ProteinPFAMPK, ProteinPFAM>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinPFAMPK(ProteinPFAMPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAM
-
- setProteinPMID(Map<ProteinPMIDPK, ProteinPMID>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setProteinPMIDPK(ProteinPMIDPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMID
-
- setProteinRefSeqPK(ProteinRefSeqPK) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeq
-
- setProteinSignificant(Set<Protein>) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasProteinPK
-
- setProteinWID(BigInteger) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinAccessionNumberPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinBioCycPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDIPPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDrugBankPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinECPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinhasProteinKeywordPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinIntActPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKEGGPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinMINTPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinNamePK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPDBPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPFAMPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinPMIDPK
-
- setProteinWID(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinRefSeqPK
-
- setPTo(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setPTTFile(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setRank(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setrClass(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setRClass(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setReaction(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setReaction(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the reaction property.
- setRef(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setReference(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setReference(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setRefType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setRefTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setRegionId(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setRelationship(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneGroupPK
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamProteomeRegions
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setRelationsToNull() - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setReleaseDate(Date) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's release date
- setReleaseDate(Date) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setReleaseValue(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setRemark(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setRemark(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setRemark(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setResidueCoverage(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setResolution(BigDecimal) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setResource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setResource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setResultPanel(ResultPanel) - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Set the ResultPanel
- setRNANucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setrNANucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setRNANucleotideAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setRNANucleotideAccessionVersion(Integer) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setRNANucleotideGi(BigInteger) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setRoute(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setRouteOfElimination(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setRunlinks(boolean) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the runlinks flag.
- setSa(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setScope(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyhasOntologySynonymPK
-
- setScore(Double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setScrollerFor(JMenu) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled with the default number of items to
display at a time and the default scrolling interval.
- setScrollerFor(JPopupMenu) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled with the default number of items to
display at a time and the default scrolling interval.
- setScrollerFor(JMenu, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled with the default number of items to
display at a time and the specified scrolling interval.
- setScrollerFor(JPopupMenu, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled with the default number of items to
display at a time and the specified scrolling interval.
- setScrollerFor(JMenu, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled, with the specified number of items to
display at a time and the specified scrolling interval.
- setScrollerFor(JPopupMenu, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled, with the specified number of items
to display at a time and the specified scrolling interval.
- setScrollerFor(JMenu, int, int, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a menu to be scrolled, with the specified number of items to
display in the scrolling region, the specified scrolling interval, and
the specified numbers of items fixed at the top and bottom of the menu.
- setScrollerFor(JPopupMenu, int, int, int, int) - Static method in class org.jbiowh.gui.component.popup.MenuScroller
-
Registers a popup menu to be scrolled, with the specified number of items
to display in the scrolling region, the specified scrolling interval, and
the specified numbers of items fixed at the top and bottom of the popup
menu.
- setSearchMethod(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setSecondary(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setSeedConsensus(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSeedSource(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSeq(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeq(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setSeqEnd(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setSeqEnd(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setSeqID(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setSeqLength(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeqModified(Date) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeqRef(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setSeqResource(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeed
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setSeqStart(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setSeqStart(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setSeqType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setSequence(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setSequence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setSequenceBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSequenceBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSequenceBitsScore(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSequenceCoverage(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setSequenceEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setSequenceEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setSequenceEvalueScore(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setSequenceGA(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSequenceNC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSequenceTC(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setSeqVersion(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setSeqVersion(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setSeqVersion(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflict
-
- setSerial(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setSource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setSource(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setSourceId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setSpecies(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setsQLTableViewPanel(SQLTableViewPanel) - Method in class org.jbiowh.gui.component.panel.result.ResultPanelFactory
-
Set the SQL Table view panel
- setStart(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setStartFullName(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setStartPositionOnTheGenomicAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setStartShortLabel(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Accession
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's status
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setStatus(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.EvidencedStringType
-
- setStrand(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setStrength(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setSubstructure(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setSymbol(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setSymbolFromNomenclature(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setSynonym(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setSynonym(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- setSynonym(Map<TaxonomySynonymPK, TaxonomySynonym>) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setSynonym(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- setSynonyms(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfoSynonymsPK
-
- setSynthesisRef(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setSySName(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setTableDimensions() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Set the table dimensions
- setTableDimensions() - Method in class org.jbiowh.gui.datasets.pathway.reaction.KEGGReactionListView
-
- setTag(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTXPK
-
- setTagname(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- setTagname(String) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTaxID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setTaxId(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.geneptt.GenePTT
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setTaxonomy(Taxonomy) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- setTaxonomyDivisionWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomyGenCodeWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomyHost(Set<Taxonomy>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setTaxonomyMCGenCodeWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setTaxonomyPMIDPK(TaxonomyPMIDPK) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMID
-
- setTaxonomySynonymNameClassWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- setTaxonomySynonymPK(TaxonomySynonymPK) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonym
-
- setTaxonomyWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyPMIDPK
-
- setTaxonomyWID(long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymPK
-
- setTempdir(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the temporal directory use to parse the data source
- setTempdirectory(String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Set the temporal directory to create the files
- setTerm(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setTermAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameterPK
-
- setText(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setText(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setTextEvidence(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setTextStatus(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setTi(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTIPK
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setTitle(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Pathway
-
Sets the value of the title property.
- setToConsiderOntology(Ontology) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsider
-
- setToConsiderOntologyWID(long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyToConsiderPK
-
- setTotalAaCovered(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTotalAaLength(long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTotalGenomeProteins(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setTotalSeqsCovered(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setToxicity(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setTreeOrder(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setTreeOrder(Integer) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setTreeOrder(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegSeedPK
-
- setTx(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setTx(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMTX
-
- setType(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setType(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setType(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the data source type
- setType(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyRelation
-
- setType(String) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Entry
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
Sets the value of the type property.
- setType(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setType(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setType(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setType(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentConflictPK
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setType(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setType(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column's type
- setType(String) - Method in class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Set the index's type
- setTypeAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setTypeExample(int) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setTypeId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamOtherReg
-
- setTypeOfGene(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setTypes(Class[]) - Method in class org.jbiowh.gui.component.table.model.EditCellTableModel
-
Set the class types for each column
- setUncertainty(Float) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setUniGene(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2UniGenePK
-
- setUniProtId(String) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqhasUniProtId
-
- setUniProtKBProteinAccession(String) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneRefSeqUniprotPK
-
- setUniRefEntry(UniRefEntry) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setUniRefEntry(UniRefEntry) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setUniRefEntry(Set<UniRefEntry>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setUniRefEntryProperty(Set<UniRefEntryProperty>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setUniRefEntryWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setUniRefEntryWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setUniRefMember(Set<UniRefMember>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setUniRefMember(UniRefMember) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setUniRefMember(Set<UniRefMember>) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setUniRefMemberProperty(Set<UniRefMemberProperty>) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setUniRefMemberWID(long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setUniSTSID(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2STSPK
-
- setUnit(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setUnit(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setUnitAc(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantParameter
-
- setUnparse(Set<TaxonomyUnParseCitation>) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setUpdated(Date) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setUQ(boolean) - Method in class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Set the column as UQ
- setUri(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentLinkPK
-
- setUrl(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setUrl(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setUrl(String) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setUrl(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL DB URL
- setUrl(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL DB URL
- setUser(String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
Set the MySQL DB user
- setUser(String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
Set the MySQL DB user
- setValue(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setValue(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setValue(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelationSubTypePK
-
- setValue(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
Sets the value of the value property.
- setValue(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setValue(String) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.ConstrainsTableModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableColumnModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableIndexModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.CreateTableModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.ExtendedListTableModel
-
- setValueAt(Object, int, int) - Method in class org.jbiowh.gui.component.table.model.ListTableModel
-
- setValueVal(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setVariation(String) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setVersion(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setVersion(Short) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's version
- setVersion(Integer) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setVersion(Integer) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setVersion(String) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.AbstractDataSetView
-
Set the panel visible
- setVisible() - Method in class org.jbiowh.gui.component.panel.ConstrainPanel
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.HomePanel
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.list.AbstractListView
-
Show the AbstractListView panel
- setVisible() - Method in class org.jbiowh.gui.component.panel.SearchPanel
-
- setVisible() - Method in class org.jbiowh.gui.component.panel.sql.SQLBrowsePanel
-
Shows the SQLBrowsePanel
- setVisible() - Method in class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Set the SQLEditorPanel visible
- setVisible() - Method in class org.jbiowh.gui.datasets.EntityParserViewProxy
-
Set the panel visible
- setVisible(Object, JComponent) - Method in class org.jbiowh.gui.datasets.ListViewProxy
-
Creates the ListView object to show the results
- setViterbiLambda(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setViterbiMu(double) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setVolumeOfDistribution(String) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIM
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMAV
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCS
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMCSData
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMMorbidMap
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMRF
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMSA
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAbioWH
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamADatabaseLinks
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamANCBIReg
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamAPDBReg
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamArchitecture
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullInsignificant
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamARegFullSignificant
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBbioWH
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamBReg
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClanDatabaseLinks
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamClans
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamCompleteProteomes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamContextRegions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamLiteratureReferences
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamMarkupKey
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamNestedLocations
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDB
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamPDBResidueData
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.domain.pfam.jpa.entities.PfamSeqDisulphide
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBank
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAffectedOrganisms
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankAHFSCodes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankATCCodes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankBrands
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCalculatedProperties
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCarriersRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankCategories
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankDosages
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymes
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankEnzymesRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExperimentalProperties
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalIdentifiers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankExternalLinks
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankFoodInteractions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGeneralRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankGroup
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankManufacturers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankMixtures
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPackagers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPatents
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankPrices
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankProteinSequences
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSecondAccessionNumbers
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankSynonyms
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargets
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTargetsRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomy
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTaxonomySubstructures
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransporters
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersActions
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.drug.drugbank.jpa.entities.DrugBankTransportersRef
-
- setWid(long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2AccessionPK
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.Gene2Ensembl
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.gene.jpa.entities.gene.GeneInfo
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.mainloader.entities.DataSet
-
Set the DataSet's Id
- setWid(Long) - Method in class org.jbiowh.core.datasets.mainloader.entities.WidTable
-
Set the WidTable's Id
- setWid(Long) - Method in class org.jbiowh.core.datasets.mainloader.WIDFactory
-
Set the WID value
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.Ontology
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySubset
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologySynonym
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ontology.jpa.entities.OntologyXRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompound
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGCompoundName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.compound.KEGGRPair
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzyme
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeClass
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.enzyme.KEGGEnzymeSysName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGene
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneDisease
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.gene.KEGGGeneName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycan
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanClass
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.glycan.KEGGGlycanName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathway
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntry
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayReaction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayRelation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReaction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.reaction.KEGGReactionName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCellType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeCompartment
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFBioSourceTypeTissue
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryExperiment
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteraction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntryInteractor
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySet
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySetEntry
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFEntrySource
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentFeatDetecMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentInterDetecMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFExperimentPartIdentMethod
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatDetMeth
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureRange
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFFeatureFeatureType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInferredInteraction
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionInteractionType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractionParticipant
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFInteractorInteractorType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAlias
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherAttribute
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBibRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherBioSourceType
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherConfidence
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRef
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefGO
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefPubMed
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefRefSeq
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFOtherXRefUniprot
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantBiologicalRole
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalInteractor
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalPreparation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantExperimentalRole
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantFeature
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.ppi.jpa.entities.MIFParticipantPartIdentMeth
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntry
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefEntryProperty
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMember
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protclust.jpa.entities.UniRefMemberProperty
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.Protein
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinComment
-
- setWid(long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentInteractPK
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentIsoform
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinCommentSubCellularLocation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinDBReference
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeature
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinFeatureVariation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinGeneLocation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinKeyword
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinLongName
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.protein.jpa.entities.ProteinOtherLocation
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.Taxonomy
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyDivision
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyGenCode
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomySynonymNameClass
-
- setWid(Long) - Method in class org.jbiowh.core.datasets.taxonomy.jpa.entities.TaxonomyUnParseCitation
-
- setWidth(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setWidth(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the width property.
- setX(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setX(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the x property.
- setXsdfiledef(String) - Method in class org.jbiowh.core.datasets.mainloader.DataSetFactory
-
Set the Xsdfiledef parameter
- setY(Integer) - Method in class org.jbiowh.core.datasets.pathway.kegg.jpa.entities.pathway.KEGGPathwayEntryGraphic
-
- setY(String) - Method in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Graphics
-
Sets the value of the y property.
- setYear(String) - Method in class org.jbiowh.core.datasets.disease.omim.jpa.entities.OMIMGeneMap
-
- showPopop(MouseEvent) - Method in class org.jbiowh.gui.component.panel.result.ResultPanel
-
- showPopop(MouseEvent) - Method in class org.jbiowh.gui.component.panel.sql.SQLTableViewPanel
-
- showPopop(MouseEvent) - Method in class org.jbiowh.gui.component.panel.TreeViewPanel
-
Show the popup in the tree view
- size() - Method in class org.jbiowh.core.datasets.gene.utils.Chromosome
-
Return the amount of genes on the chromosome
- SOURCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.PropertyTypeTags
-
- Source - Class in org.jbiowh.core.datasets.ppi.parser.xml
-
This Class handled the XML Source Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- Source() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
This constructor initialize the WH file manager and the WH DataSet
manager
- SourceTags - Class in org.jbiowh.core.datasets.ppi.parser.xml.tags
-
This Class storage the XML Source Tags on MIF25
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SourceTags() - Constructor for class org.jbiowh.core.datasets.ppi.parser.xml.tags.SourceTags
-
- split(String, long, String) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.utility.DrugBankSplitReference
-
This method split the DrugBank reference and print it on the relational
table
- splitField(PrintWriter, String, String, String, String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header
- splitField(PrintWriter, String, String, String, String, String) - Method in class org.jbiowh.core.dbms.mysql.WHMySQL
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header.
- splitField(PrintWriter, String, String, String, String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header
- splitField(PrintWriter, String, String, String, String, String) - Method in interface org.jbiowh.core.dbms.WHDBMSFactory
-
This metho split the field2header field returned on the sql sentence into
a string array repeating the field1header.
- SQLBrowsePanel - Class in org.jbiowh.gui.component.panel.sql
-
This JPanel is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-08 15:29:16 +0200 (Mon, 08 Oct 2012) $
$LastChangedRevision: 273 $
- SQLBrowsePanel(String, List, JComponent) - Constructor for class org.jbiowh.gui.component.panel.sql.SQLBrowsePanel
-
Creates new form SQLBrowsePanel
- SQLConstrainException - Exception in org.jbiowh.core.dbms.sql.exception
-
This Class is an exception for the SQL Constrains between two non connected
DataSets
- SQLConstrainException(String, Throwable) - Constructor for exception org.jbiowh.core.dbms.sql.exception.SQLConstrainException
-
Constructs a new SQLConstrain exception with the specified detail message.
- SQLConstrainException(String) - Constructor for exception org.jbiowh.core.dbms.sql.exception.SQLConstrainException
-
Create the SQLConstrainException
- SQLDocumentFilter - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class is
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLDocumentFilter(WHDBMSFactory) - Constructor for class org.jbiowh.gui.component.panel.sql.syntax.SQLDocumentFilter
-
- SQLEditorPanel - Class in org.jbiowh.gui.component.panel.sql
-
This JPanel is
$Author: r78v10a07@gmail.com $ $LastChangedDate: 2012-08-31 15:46:36 +0200
(Fri, 31 Aug 2012) $ $LastChangedRevision: 396 $
- SQLEditorPanel(JComponent, WHDBMSFactory) - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel
-
Creates new form SQLEditorPanel
- SQLEditorPanel.MyUndoableEditListener - Class in org.jbiowh.gui.component.panel.sql
-
The Document listener for the Undo and Redo process
- SQLEditorPanel.MyUndoableEditListener() - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel.MyUndoableEditListener
-
- SQLEditorPanel.RedoAction - Class in org.jbiowh.gui.component.panel.sql
-
The RedoAction Class definition
- SQLEditorPanel.RedoAction() - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel.RedoAction
-
Create the Redo Action
- SQLEditorPanel.UndoAction - Class in org.jbiowh.gui.component.panel.sql
-
The UndoAction Class definition
- SQLEditorPanel.UndoAction() - Constructor for class org.jbiowh.gui.component.panel.sql.SQLEditorPanel.UndoAction
-
Create the Undo Action
- SQLFunctionsAndOperators - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class handled the SQL Arithmetic Operators
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLReservedWords - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class handled the SQL reserved words
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLSpecialChar - Class in org.jbiowh.gui.component.panel.sql.syntax
-
This Class handled the SQL special characters parenthesis
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTable - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQL Table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTable() - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String, String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String, String, SQLTableColumns) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTable(String, String, SQLTableColumns, SQLTableIndexes) - Constructor for class org.jbiowh.core.dbms.sql.SQLTable
-
Creates a SQL Table object
- SQLTableColumn - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQL Table Column
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTableColumn(String, int, String, boolean, boolean, boolean, boolean, Object) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableColumn
-
Creates a table column
- SQLTableColumns - Class in org.jbiowh.core.dbms.sql
-
This Class is the columns handler in a SQLTable
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTableColumns() - Constructor for class org.jbiowh.core.dbms.sql.SQLTableColumns
-
Creates the columns handler in a SQLTable
- SQLTableException - Exception in org.jbiowh.gui.sqltables.exception
-
This Class is the Exception to be use during the table creating process
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableException(String) - Constructor for exception org.jbiowh.gui.sqltables.exception.SQLTableException
-
- SQLTableIndex - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQL Table Index
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2013-03-19 09:38:47 +0100 (Tue, 19 Mar 2013) $
$LastChangedRevision: 396 $
- SQLTableIndex(String, int, String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Create a SQL index for a table
- SQLTableIndex(String, int, String, ConcurrentHashMap<String, SQLTableIndexColumn>) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndex
-
Create a SQL index for a table
- SQLTableIndexColumn - Class in org.jbiowh.core.dbms.sql
-
This Class is the SQLtable index colum
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableIndexColumn(String, int, String, String) - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndexColumn
-
Create the SQL Table Index Column
- SQLTableIndexes - Class in org.jbiowh.core.dbms.sql
-
This Class handled the indexes in a table
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableIndexes() - Constructor for class org.jbiowh.core.dbms.sql.SQLTableIndexes
-
Creates the indexes handler in a SQLTable
- SQLTableViewPanel - Class in org.jbiowh.gui.component.panel.sql
-
This Class is the SQL Table View panel
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-08-31 15:46:36 +0200 (Fri, 31 Aug 2012) $
$LastChangedRevision: 231 $
- SQLTableViewPanel(JTabbedPane) - Constructor for class org.jbiowh.gui.component.panel.sql.SQLTableViewPanel
-
- start(Collection, String) - Method in class org.jbiowh.core.utility.utils.ParseFiles
-
Start the Parser files factory setting the temporal directory and the
list of files names
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.BondType
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Drug
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.DrugBankDefaultHandler
-
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.MultipleFieldXMLParser
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Partner
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.Taxonomy
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.TwoFieldXMLParser
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.XMLIntermedParser
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOOntologyDefaultHandler
-
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AttributeList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Availability
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.AvailabilityList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Bibref
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.BioSourceType
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Confidence
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ConfidenceList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVType
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.CVTypeList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Entry
-
This is the startElement method
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.EntrySet
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractor
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentalInteractorList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentDescription
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ExperimentRefList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Feature
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRange
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.FeatureRangeList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.HostOrganismList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteraction
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InferredInteractionList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interaction
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractionList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Interactor
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.InteractorList
-
This is the startElement method
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.MIF25DefaultHandler
-
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Names
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.OpenCvType
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Parameter
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParameterList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Participant
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.ParticipantList
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Source
-
This is the startElement method
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.ppi.parser.xml.Xref
-
This is the startElement method
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.Entry
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.MemberType
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefDefaultHandler
-
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protclust.parser.xml.UniRefXML
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Comment
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Conflict
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.DBReference
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Entry
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Feature
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Gene
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.GeneLocation
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Interactant
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Isoform
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Keyword
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Location
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Organism
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.ProteinType
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Reference
-
This is the method for the Header on GO
- startElement(String, int, Attributes) - Method in class org.jbiowh.core.datasets.protein.parser.xml.Sequence
-
This is the method for the Header on GO
- startElement(String, int, Attributes, long) - Method in class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
This is the method for the Header on GO
- startElement(String, String, String, Attributes) - Method in class org.jbiowh.core.datasets.protein.parser.xml.UniprotDefaultHandler
-
- startElementGOHeader(String, int) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOHeader
-
This is the method for the Header on GO
- startElementGOTerm(String, int, Attributes) - Method in class org.jbiowh.core.datasets.ontology.parser.xml.GOTerm
-
This is the method for the Header on GO
- startTransfer(WHDBMSFactory, Object) - Method in class org.jbiowh.core.dbms.transfer.TransferData
-
- STRAND - Variable in class org.jbiowh.core.datasets.gene.search.SearchGenePTT
-
- STRENGTH - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DosagesTags
-
- STRUCTURE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- SubCellularLocation - Class in org.jbiowh.core.datasets.protein.parser.xml
-
This Class handled the XML SubCellularLocation tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-11-08 14:37:19 +0100 (Thu, 08 Nov 2012) $
$LastChangedRevision: 322 $
- SubCellularLocation() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.SubCellularLocation
-
This constructor initialize the WH file manager and the WH DataSet
manager
- SubCellularLocationTags - Class in org.jbiowh.core.datasets.protein.parser.xml.tags
-
This Class storage the XML SubCellularLocation tags on Uniprot
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SubCellularLocationTags() - Constructor for class org.jbiowh.core.datasets.protein.parser.xml.tags.SubCellularLocationTags
-
- substrate - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Reaction
-
- Substrate - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Substrate XML parser from JAXB for KGML file format
- Substrate() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Substrate
-
- SUBSTRATE - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- SUBSTRUCTURE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TaxonomyTags
-
- SUBSTRUCTURES - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.TaxonomyTags
-
- subtype - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Relation
-
- Subtype - Class in org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml
-
This is the Subtype XML parser from JAXB for KGML file format
- Subtype() - Constructor for class org.jbiowh.core.datasets.pathway.kegg.parser.kgml.xml.Subtype
-
- SYMBOL - Variable in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SynonymsTags
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.drug.drugbank.search.SearchDrugBank
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.gene.search.SearchGeneInfo
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.ontology.search.SearchOntology
-
- SYNONYM - Variable in class org.jbiowh.core.datasets.taxonomy.search.SearchTaxonomy
-
- SYNONYMS - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.SynonymsTags
-
- SynonymsTags - Class in org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags
-
This class is the Synonyms XML Tags
$Author: r78v10a07@gmail.com $
$LastChangedDate: 2012-10-03 22:11:05 +0200 (Wed, 03 Oct 2012) $
$LastChangedRevision: 270 $
- SYNTHESISREFERENCE - Variable in class org.jbiowh.core.datasets.drug.drugbank.parser.xml.tags.DrugTags
-
- SYSNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.parser.utility.KEGGParserFieldTags
-
- SYSNAME - Variable in class org.jbiowh.core.datasets.pathway.kegg.search.SearchKEGGEnzyme
-